Publications

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2006

Mahadevan R, Bond DR, Butler JE, Esteve-Nuñez A, Coppi MV, Palsson BO, Schilling CH, Lovley DR. 2006. Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.. Appl Environ Microbiol. 72(2):1558-68.

Hu Y, Holden JF. 2006. Citric acid cycle in the hyperthermophilic archaeon Pyrobaculum islandicum grown autotrophically, heterotrophically, and mixotrophically with acetate.. J Bacteriol. 188(12):4350-5.

Yan B, Núñez C, Ueki T, Esteve-Núñez A, Puljic M, Adkins RM, Methé BA, Lovley DR, Krushkal J. 2006. Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.

Haveman SA, Holmes DE, Ding Y-HR, Ward JE, Didonato RJ, Lovley DR. 2006. c-Type cytochromes in Pelobacter carbinolicus.. Appl Environ Microbiol. 72(11):6980-5.

2005

Norkin LC, Kuksin D. 2005. The caveolae-mediated sv40 entry pathway bypasses the golgi complex en route to the endoplasmic reticulum.. Virol J. 2:38.

Bond DR, Mester T, Nesbø CL, Izquierdo-Lopez AV, Collart FL, Lovley DR. 2005. Characterization of citrate synthase from Geobacter sulfurreducens and evidence for a family of citrate synthases similar to those of eukaryotes throughout the Geobacteraceae.. Appl Environ Microbiol. 71(7):3858-65.

Griffith KL, Becker SM, Wolf RE. 2005. Characterization of TetD as a transcriptional activator of a subset of genes of the Escherichia coli SoxS/MarA/Rob regulon.. Mol Microbiol. 56(4):1103-17.

Morita YS, Velasquez R, Taig E, Waller RF, Patterson JH, Tull D, Williams SJ, Billman-Jacobe H, McConville MJ. 2005. Compartmentalization of lipid biosynthesis in mycobacteria.. J Biol Chem. 280(22):21645-52.

Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, Pupko T, Ben-Tal N. 2005. ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.. Nucleic Acids Res. 33(Web Server issue):W299-302.

Lovley DR. 2005. Crystal ball. In silico biology meets in situ phenomenology.. Environ Microbiol. 7(4):478-9.

2004

Webley WC, Norkin LC, Stuart ES. 2004. Caveolin-2 associates with intracellular chlamydial inclusions independently of caveolin-1.. BMC Infect Dis. 4:23.

Webley WC, Vora GJ, Stuart ES. 2004. Cell surface display of the chlamydial glycolipid exoantigen (GLXA) demonstrated by antibody-dependent complement-mediated cytotoxicity.. Curr Microbiol. 49(1):13-21.

Klingbeil MM, Englund PT. 2004. Closing the gaps in kinetoplast DNA network replication.. Proc Natl Acad Sci U S A. 101(13):4333-4.

Holmes DE, Nevin KP, Lovley DR. 2004. Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.. Int J Syst Evol Microbiol. 54(Pt 5):1591-9.

Yan B, Methé BA, Lovley DR, Krushkal J. 2004. Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family Geobacteraceae.. J Theor Biol. 230(1):133-44.

2003

Lovley DR. 2003. Cleaning up with genomics: applying molecular biology to bioremediation.. Nat Rev Microbiol. 1(1):35-44.

Glaser F, Pupko T, Paz I, Bell RE, Bechor-Shental D, Martz E, Ben-Tal N. 2003. ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information.. Bioinformatics. 19(1):163-4.

Tumwine JK, Kekitiinwa A, Nabukeera N, Akiyoshi DE, Rich SM, Widmer G, Feng X, Tzipori S. 2003. Cryptosporidium parvum in children with diarrhea in Mulago Hospital, Kampala, Uganda.. Am J Trop Med Hyg. 68(6):710-5.

2002

Norkin LC, Anderson HA, Wolfrom SA, Oppenheim A. 2002. Caveolar endocytosis of simian virus 40 is followed by brefeldin A-sensitive transport to the endoplasmic reticulum, where the virus disassembles.. J Virol. 76(10):5156-66.

Griffith KL, Wolf RE. 2002. A comprehensive alanine scanning mutagenesis of the Escherichia coli transcriptional activator SoxS: identifying amino acids important for DNA binding and transcription activation.. J Mol Biol. 322(2):237-57.

2001

Norkin LC. 2001. Caveolae in the uptake and targeting of infectious agents and secreted toxins.. Adv Drug Deliv Rev. 49(3):301-15.

Anderson RT, Chapelle FH, Lovley DR. 2001. Comment on "Abiotic controls on H2 production from basalt-water reactions and implications for aquifer biogeochemistry".. Environ Sci Technol. 35(7):1556-9.

Zhang S, Kamachi M, Takagi Y, Lenz RW, Goodwin S. 2001. Comparative study of the relationship between monomer structure and reactivity for two polyhydroxyalkanoate synthases.. Appl Microbiol Biotechnol. 56(1-2):131-6.

2000

Magnuson TS, Hodges-Myerson AL, Lovley DR. 2000. Characterization of a membrane-bound NADH-dependent Fe(3+) reductase from the dissimilatory Fe(3+)-reducing bacterium Geobacter sulfurreducens.. FEMS Microbiol Lett. 185(2):205-11.

Rothermich MM, Guerrero R, Lenz RW, Goodwin S. 2000. Characterization, seasonal occurrence, and diel fluctuation of poly(hydroxyalkanoate) in photosynthetic microbial mats.. Appl Environ Microbiol. 66(10):4279-91.

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