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Rivera SL, Espaillat A, Aditham AK, Shieh P, Muriel-Mundo C, Kim J, Cava F, M Siegrist S.\'a0 2021.\'a0\'a0Chemically Induced Cell Wall Stapling in Bacteria.. Cell Chem Biol. 28(2):213-220.e4.\par \par Zhou J, Holmes DE, Tang H-Y, Lovley DR.\'a0 2021.\'a0\'a0Correlation of Key Physiological Properties of  Isolates with Environment of Origin.. Appl Environ Microbiol. 87(13):e0073121.\par \par Zheng S, Liu F, Wang B, Zhang Y, Lovley DR.\'a0 2020.\'a0\'a0 Capable of Direct Interspecies Electron Transfer.. Environ Sci Technol. 54(23):15347-15354.\par \par Ueki T, Walker DJF, Woodard TL, Nevin KP, Nonnenmann SS, Lovley DR.\'a0 2020.\'a0\'a0An  Chassis for Production of Electrically Conductive Protein Nanowires.. ACS Synth Biol. 9(3):647-654.\par \par Brown AR, Gordon RA, Hyland SN, M Siegrist S, Grimes CL.\'a0 2020.\'a0\'a0Chemical Biology Tools for Examining the Bacterial Cell Wall.. Cell Chem Biol. 27(8):1052-1062.\par \par Filman DJ, Marino SF, Ward JE, Yang L, Mester Z, Bullitt E, Lovley DR, Strauss M.\'a0 2019.\'a0\'a0Cryo-EM reveals the structural basis of long-range electron transport in a cytochrome-based bacterial nanowire.. Commun Biol. 2:219.\par \par Concepci\'f3n-Acevedo J, Miller JC, Boucher MJ, Klingbeil MM.\'a0 2018.\'a0\'a0Cell cycle localization dynamics of mitochondrial DNA polymerase IC in African trypanosomes.. Mol Biol Cell. 29(21):2540-2552.\par \par Sun Y-L, Tang H-Y, Ribbe A, Duzhko V, Woodard TL, Ward JE, Bai Y, Nevin KP, Nonnenmann SS, Russell T et al..\'a0 2018.\'a0\'a0Conductive Composite Materials Fabricated from Microbially Produced Protein Nanowires.. Small. 14(44):e1802624.\par \par Ueki T, Nevin KP, Woodard TL, Aklujkar MA, Holmes DE, Lovley DR.\'a0 2018.\'a0\'a0Construction of a  Strain With Exceptional Growth on Cathodes.. Front Microbiol. 9:1512.\par \par Malvankar NS, King GM, Lovley DR.\'a0 2015.\'a0\'a0Centimeter-long electron transport in marine sediments via conductive minerals.. ISME J. 9(2):527-31.\par \par Kim Y-T, Jung J-H, Stewart LC, Kwon S-W, Holden JF, Park C-S.\'a0 2015.\'a0\'a0Complete genome sequence of the hyperthermophilic methanogen Methanocaldococcus bathoardescens JH146(T) isolated from the basalt subseafloor.. Mar Genomics. 24 Pt 3:229-30.\par \par Chen S, Rotaru A-E, Liu F, Philips J, Woodard TL, Nevin KP, Lovley DR.\'a0 2014.\'a0\'a0Carbon cloth stimulates direct interspecies electron transfer in syntrophic co-cultures.. Bioresour Technol. 173:82-86.\par \par Muller M, Demeret C.\'a0 2014.\'a0\'a0CCHCR1 Interacts Specifically with the E2 Protein of Human Papillomavirus Type 16 on a Surface Overlapping BRD4 Binding. PLoS ONE. 9:e92581.\par \par Jung J-H, Kim Y-T, Jeon E-J, Seo D-H, Hensley SA, Holden JF, Lee J-H, Park C-S.\'a0 2014.\'a0\'a0Complete genome sequence of hyperthermophilic archaeon Thermococcus sp. ES1.. J Biotechnol. 174C:14-15.\par \par Feist AM, Nagarajan H, Rotaru A-E, Tremblay P-L, Zhang T, Nevin KP, Lovley DR, Zengler K.\'a0 2014.\'a0\'a0Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens.. PLoS Comput Biol. 10(4):e1003575.\par \par Ueki T, Nevin KP, Woodard TL, Lovley DR.\'a0 2014.\'a0\'a0Converting carbon dioxide to butyrate with an engineered strain of Clostridium ljungdahlii.. mBio. 5(5):e01636-14.\par \par Shrestha PMalla, Malvankar NS, Werner JJ, Franks AE, Elena-Rotaru A, Shrestha M, Liu F, Nevin KP, Angenent LT, Lovley DR.\'a0 2014.\'a0\'a0Correlation between microbial community and granule conductivity in anaerobic bioreactors for brewery wastewater treatment.. Bioresour Technol. 174:306-10.\par \par DeAngelis KM, Chivian D, Fortney J, Simmons BA, Hazen TC, Silver WL.\'a0 2013.\'a0\'a0Changes in microbial dynamics during long-term decomposition in tropical forests.. Soil Biology and Biochemistry. 66:60-68.\par \par Nagarajan H, Embree M, Rotaru A-E, Shrestha PM, Feist AM, Palsson B\'d8, Lovley DR, Zengler K.\'a0 2013.\'a0\'a0Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association.. Nat Commun. 4:2809.\par \par Giloteaux L, Holmes DE, Williams KH, Wrighton KC, Wilkins MJ, Montgomery AP, Smith JA, Orellana R, Thompson CA, Roper TJ et al..\'a0 2013.\'a0\'a0Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation.. ISME J. 7(2):370-83.\par \par Nagarajan H, Sahin M, Nogales J, Latif H, Lovley DR, Ebrahim A, Zengler K.\'a0 2013.\'a0\'a0Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii.. Microb Cell Fact. 12:118.\par \par Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Ju\'e1rez K, Cho B-K, Elkins JG, Nevin KP, Barrett CL et al..\'a0 2013.\'a0\'a0Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.. Nat Commun. 4:1755.\par \par Muller M, Cassonnet P, Favre M, Jacob Y, Demeret C.\'a0 2013.\'a0\'a0A Comparative Approach to Characterize the Landscape of Host-Pathogen Protein-Protein Interactions. Journal of Visualized Experiments. \par \par Rodrigues JLM, Pellizari VH, Mueller R, Baek K, Jesus Eda C, Paula FS, Mirza B, Hamaoui GS, Tsai SMui, Feigl B et al..\'a0 2013.\'a0\'a0Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities.. Proc Natl Acad Sci U S A. 110(3):988-93.\par \par Fukuda T, Matsumura T, Ato M, Hamasaki M, Nishiuchi Y, Murakami Y, Maeda Y, Yoshimori T, Matsumoto S, Kobayashi K et al..\'a0 2013.\'a0\'a0Critical roles for lipomannan and lipoarabinomannan in cell wall integrity of mycobacteria and pathogenesis of tuberculosis.. MBio. 4(1)\par \par Neveu G, Cassonnet P, Vidalain P-O, Rolloy C, Mendoza J, Jones L, Tangy F, Muller M, Demeret C, Tafforeau L et al..\'a0 2012.\'a0\'a0Comparative analysis of virus?host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. Methods. 58:349?359.\par \par Butler JE, Young ND, Aklujkar M, Lovley DR.\'a0 2012.\'a0\'a0Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production.. BMC Genomics. 13:471.\par \par Jung J-H, Lee J-H, Holden JF, Seo D-H, Shin H, Kim H-Y, Kim W, Ryu S, Park C-S.\'a0 2012.\'a0\'a0Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge.. J Bacteriol. 194(16):4434-5.\par \par Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S.\'a0 2012.\'a0\'a0Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.\par \par Im J, Lee S-W, Yoon S, Dispirito AA, Semrau JD.\'a0 2011.\'a0\'a0Characterization of a novel facultative Methylocystis species capable of growth on methane, acetate and ethanol.. Environ Microbiol Rep. 3(2):174-81.\par \par Deangelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC.\'a0 2011.\'a0\'a0Characterization of trapped lignin-degrading microbes in tropical forest soil.. PLoS One. 6(4):e19306.\par \par Patel KK, Salva PS, Webley WC.\'a0 2011.\'a0\'a0Colonization of paediatric lower respiratory tract with genital Mycoplasma species.. Respirology. 16(7):1081-7.\par \par Deangelis KM, D'haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport K W, Goodwin L et al..\'a0 2011.\'a0\'a0Complete genome sequence of "Enterobacter lignolyticus" SCF1.. Stand Genomic Sci. 5(1):69-85.\par \par Yoon S, Im J, Bandow N, Dispirito AA, Semrau JD.\'a0 2011.\'a0\'a0Constitutive expression of pMMO by Methylocystis strain SB2 when grown on multi-carbon substrates: implications for biodegradation of chlorinated ethenes.. Environ Microbiol Rep. 3(2):182-8.\par \par Tremblay P-L, Summers ZM, Glaven RH, Nevin KP, Zengler K, Barrett CL, Qiu Y, Palsson BO, Lovley DR.\'a0 2011.\'a0\'a0A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.. Environ Microbiol. 13(1):13-23.\par \par Sandler SJI, Figaji AA, Adelson DP.\'a0 2010.\'a0\'a0Clinical applications of biomarkers in pediatric traumatic brain injury.. Childs Nerv Syst. 26(2):205-13.\par \par Sun J, Haveman SA, Bui O, Fahland TR, Lovley DR.\'a0 2010.\'a0\'a0Constraint-based modeling analysis of the metabolism of two Pelobacter species.. BMC Syst Biol. 4:174.\par \par Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N.\'a0 2010.\'a0\'a0ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.. Nucleic Acids Res. 38(Web Server issue):W529-33.\par \par Sena CBC, Fukuda T, Miyanagi K, Matsumoto S, Kobayashi K, Murakami Y, Maeda Y, Kinoshita T, Morita YS.\'a0 2010.\'a0\'a0Controlled expression of branch-forming mannosyltransferase is critical for mycobacterial lipoarabinomannan biosynthesis.. J Biol Chem. 285(18):13326-36.\par \par Gabriel GJ, Maegerlein JA, Nelson CF, Dabkowski JM, Eren T, N\'fcsslein K, Tew GN.\'a0 2009.\'a0\'a0Comparison of facially amphiphilic versus segregated monomers in the design of antibacterial copolymers.. Chemistry. 15(2):433-9.\par \par Walk ST, Xu G, Stull JW, Rich SM.\'a0 2009.\'a0\'a0Correlation between tick density and pathogen endemicity, New Hampshire.. Emerg Infect Dis. 15(4):585-7.\par \par Scheibe TD, Mahadevan R, Fang Y, Garg S, Long PE, Lovley DR.\'a0 2009.\'a0\'a0Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.. Microb Biotechnol. 2(2):274-86.\par \par Kashefi K, Moskowitz BM, Lovley DR.\'a0 2008.\'a0\'a0Characterization of extracellular minerals produced during dissimilatory Fe(III) and U(VI) reduction at 100 degrees C by Pyrobaculum islandicum.. Geobiology. 6(2):147-54.\par \par Mahadevan R, Yan B, Postier B, Nevin KP, Woodard TL, O'Neil R, Coppi MV, Meth\'e9 BA, Krushkal J.\'a0 2008.\'a0\'a0Characterizing regulation of metabolism in Geobacter sulfurreducens through genome-wide expression data and sequence analysis.. OMICS. 12(1):33-59.\par \par Tran HT, Krushkal J, Antommattei FM, Lovley DR, Weis RM.\'a0 2008.\'a0\'a0Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function.. BMC Genomics. 9:471.\par \par Segura D, Mahadevan R, Ju\'e1rez K, Lovley DR.\'a0 2008.\'a0\'a0Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.. PLoS Comput Biol. 4(2):e36.\par \par Feinberg LF, Srikanth R, Vachet RW, Holden JF.\'a0 2008.\'a0\'a0Constraints on anaerobic respiration in the hyperthermophilic Archaea Pyrobaculum islandicum and Pyrobaculum aerophilum.. Appl Environ Microbiol. 74(2):396-402.\par \par Yennaco LJ, Hu Y, Holden JF.\'a0 2007.\'a0\'a0Characterization of malate dehydrogenase from the hyperthermophilic archaeon Pyrobaculum islandicum.. Extremophiles. 11(5):741-6.\par \par Gomez-Alvarez V, King GM, N\'fcsslein K.\'a0 2007.\'a0\'a0Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages.. FEMS Microbiol Ecol. 60(1):60-73.\par \par Feinberg LF, Holden JF.\'a0 2006.\'a0\'a0Characterization of dissimilatory Fe(III) versus NO3- reduction in the hyperthermophilic archaeon Pyrobaculum aerophilum.. J Bacteriol. 188(2):525-31.\par \par Mahadevan R, Bond DR, Butler JE, Esteve-Nu\'f1ez A, Coppi MV, Palsson BO, Schilling CH, Lovley DR.\'a0 2006.\'a0\'a0Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.. Appl Environ Microbiol. 72(2):1558-68.\par \par Hu Y, Holden JF.\'a0 2006.\'a0\'a0Citric acid cycle in the hyperthermophilic archaeon Pyrobaculum islandicum grown autotrophically, heterotrophically, and mixotrophically with acetate.. J Bacteriol. 188(12):4350-5.\par \par Yan B, N\'fa\'f1ez C, Ueki T, Esteve-N\'fa\'f1ez A, Puljic M, Adkins RM, Meth\'e9 BA, Lovley DR, Krushkal J.\'a0 2006.\'a0\'a0Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.\par \par Haveman SA, Holmes DE, Ding Y-HR, Ward JE, Didonato RJ, Lovley DR.\'a0 2006.\'a0\'a0c-Type cytochromes in Pelobacter carbinolicus.. Appl Environ Microbiol. 72(11):6980-5.\par \par Norkin LC, Kuksin D.\'a0 2005.\'a0\'a0The caveolae-mediated sv40 entry pathway bypasses the golgi complex en route to the endoplasmic reticulum.. Virol J. 2:38.\par \par Bond DR, Mester T, Nesb\'f8 CL, Izquierdo-Lopez AV, Collart FL, Lovley DR.\'a0 2005.\'a0\'a0Characterization of citrate synthase from Geobacter sulfurreducens and evidence for a family of citrate synthases similar to those of eukaryotes throughout the Geobacteraceae.. Appl Environ Microbiol. 71(7):3858-65.\par \par Griffith KL, Becker SM, Wolf RE.\'a0 2005.\'a0\'a0Characterization of TetD as a transcriptional activator of a subset of genes of the Escherichia coli SoxS/MarA/Rob regulon.. Mol Microbiol. 56(4):1103-17.\par \par Morita YS, Velasquez R, Taig E, Waller RF, Patterson JH, Tull D, Williams SJ, Billman-Jacobe H, McConville MJ.\'a0 2005.\'a0\'a0Compartmentalization of lipid biosynthesis in mycobacteria.. J Biol Chem. 280(22):21645-52.\par \par Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, Pupko T, Ben-Tal N.\'a0 2005.\'a0\'a0ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.. Nucleic Acids Res. 33(Web Server issue):W299-302.\par \par Lovley DR.\'a0 2005.\'a0\'a0Crystal ball. In silico biology meets in situ phenomenology.. Environ Microbiol. 7(4):478-9.\par \par Webley WC, Norkin LC, Stuart ES.\'a0 2004.\'a0\'a0Caveolin-2 associates with intracellular chlamydial inclusions independently of caveolin-1.. BMC Infect Dis. 4:23.\par \par Webley WC, Vora GJ, Stuart ES.\'a0 2004.\'a0\'a0Cell surface display of the chlamydial glycolipid exoantigen (GLXA) demonstrated by antibody-dependent complement-mediated cytotoxicity.. Curr Microbiol. 49(1):13-21.\par \par Klingbeil MM, Englund PT.\'a0 2004.\'a0\'a0Closing the gaps in kinetoplast DNA network replication.. Proc Natl Acad Sci U S A. 101(13):4333-4.\par \par Holmes DE, Nevin KP, Lovley DR.\'a0 2004.\'a0\'a0Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.. Int J Syst Evol Microbiol. 54(Pt 5):1591-9.\par \par Yan B, Meth\'e9 BA, Lovley DR, Krushkal J.\'a0 2004.\'a0\'a0Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family Geobacteraceae.. J Theor Biol. 230(1):133-44.\par \par Lovley DR.\'a0 2003.\'a0\'a0Cleaning up with genomics: applying molecular biology to bioremediation.. Nat Rev Microbiol. 1(1):35-44.\par \par Glaser F, Pupko T, Paz I, Bell RE, Bechor-Shental D, Martz E, Ben-Tal N.\'a0 2003.\'a0\'a0ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information.. Bioinformatics. 19(1):163-4.\par \par Tumwine JK, Kekitiinwa A, Nabukeera N, Akiyoshi DE, Rich SM, Widmer G, Feng X, Tzipori S.\'a0 2003.\'a0\'a0Cryptosporidium parvum in children with diarrhea in Mulago Hospital, Kampala, Uganda.. Am J Trop Med Hyg. 68(6):710-5.\par \par Norkin LC, Anderson HA, Wolfrom SA, Oppenheim A.\'a0 2002.\'a0\'a0Caveolar endocytosis of simian virus 40 is followed by brefeldin A-sensitive transport to the endoplasmic reticulum, where the virus disassembles.. J Virol. 76(10):5156-66.\par \par Griffith KL, Wolf RE.\'a0 2002.\'a0\'a0A comprehensive alanine scanning mutagenesis of the Escherichia coli transcriptional activator SoxS: identifying amino acids important for DNA binding and transcription activation.. J Mol Biol. 322(2):237-57.\par \par Norkin LC.\'a0 2001.\'a0\'a0Caveolae in the uptake and targeting of infectious agents and secreted toxins.. Adv Drug Deliv Rev. 49(3):301-15.\par \par Anderson RT, Chapelle FH, Lovley DR.\'a0 2001.\'a0\'a0Comment on "Abiotic controls on H2 production from basalt-water reactions and implications for aquifer biogeochemistry".. Environ Sci Technol. 35(7):1556-9.\par \par Zhang S, Kamachi M, Takagi Y, Lenz RW, Goodwin S.\'a0 2001.\'a0\'a0Comparative study of the relationship between monomer structure and reactivity for two polyhydroxyalkanoate synthases.. Appl Microbiol Biotechnol. 56(1-2):131-6.\par \par Magnuson TS, Hodges-Myerson AL, Lovley DR.\'a0 2000.\'a0\'a0Characterization of a membrane-bound NADH-dependent Fe(3+) reductase from the dissimilatory Fe(3+)-reducing bacterium Geobacter sulfurreducens.. FEMS Microbiol Lett. 185(2):205-11.\par \par Rothermich MM, Guerrero R, Lenz RW, Goodwin S.\'a0 2000.\'a0\'a0Characterization, seasonal occurrence, and diel fluctuation of poly(hydroxyalkanoate) in photosynthetic microbial mats.. Appl Environ Microbiol. 66(10):4279-91.\par \par Elkhaimi M, Kaadige MR, Kamath D, Jackson JC, Biliran H, Lopes JM.\'a0 2000.\'a0\'a0Combinatorial regulation of phospholipid biosynthetic gene expression by the UME6, SIN3 and RPD3 genes.. Nucleic Acids Res. 28(16):3160-7.\par \par Coates JD, Councell T, Ellis DJ, Lovley DR.\'a0 1998.\'a0\'a0Carbohydrate oxidation coupled to Fe(III) reduction, a novel form of anaerobic metabolism.. Anaerobe. 4(6):277-82.\par \par N\'fcsslein K, Tiedje JM.\'a0 1998.\'a0\'a0Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition.. Appl Environ Microbiol. 64(4):1283-9.\par \par Duran E, Komuniecki RW, Komuniecki PR, Wheelock MJ, Klingbeil MM, Ma YC, Johnson KR.\'a0 1993.\'a0\'a0Characterization of cDNA clones for the 2-methyl branched-chain enoyl-CoA reductase. An enzyme involved in branched-chain fatty acid synthesis in anaerobic mitochondria of the parasitic nematode Ascaris suum.. J Biol Chem. 268(30):22391-6.\par \par Rand PW, Lacombe EH, Smith RP, Rich SM, Kilpatrick CW, Dragoni CA, Caporale D.\'a0 1993.\'a0\'a0Competence of Peromyscus maniculatus (Rodentia: Cricetidae) as a reservoir host for Borrelia burgdorferi (Spirochaetares: Spirochaetaceae) in the wild.. J Med Entomol. 30(3):614-8.\par \par Phillips EJ, Lovley DR, Roden EE.\'a0 1993.\'a0\'a0Composition of Non-Microbially Reducible Fe(III) in Aquatic Sediments.. Appl Environ Microbiol. 59(8):2727-9.\par \par Breau WC, Atwood WJ, Norkin LC.\'a0 1992.\'a0\'a0Class I major histocompatibility proteins are an essential component of the simian virus 40 receptor.. J Virol. 66(4):2037-45.\par \par Lovley DR, Phillips EJ.\'a0 1987.\'a0\'a0Competitive mechanisms for inhibition of sulfate reduction and methane production in the zone of ferric iron reduction in sediments.. Appl Environ Microbiol. 53(11):2636-41.\par \par Weitzman PD, Danson MJ.\'a0 1976.\'a0\'a0Citrate synthase.. Curr Top Cell Regul. 10:161-204.\par \par Moroi K, Sato T.\'a0 1975.\'a0\'a0Comparison between procaine and isocarboxazid metabolism in vitro by a liver microsomal amidase-esterase.. Biochem Pharmacol. 24(16):1517-21.\par \par Tarentino AL, Maley F.\'a0 1975.\'a0\'a0A comparison of the substrate specificities of endo-beta-N-acetylglucosaminidases from Streptomyces griseus and Diplococcus Pneumoniae.. Biochem Biophys Res Commun. 67(1):455-62.\par \par }