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2011

Deangelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME et al.. 2011. PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.. Appl Environ Microbiol. 77(18):6313-22.

Deangelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME et al.. 2011. PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.. Appl Environ Microbiol. 77(18):6313-22.

Prilusky J, Hodis E, Canner D, Decatur WA, Oberholser K, Martz E, Berchanski A, Harel M, Sussman JL. 2011. Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.. J Struct Biol. 175(2):244-52.

2010

Patel KK, Vicencio AG, Du Z, Tsirilakis K, Salva PS, Webley WC. 2010. Infectious Chlamydia pneumoniae is associated with elevated interleukin-8 and airway neutrophilia in children with refractory asthma.. Pediatr Infect Dis J. 29(12):1093-8.

Deangelis KM, Silver WL, Thompson AW, Firestone MK. 2010. Microbial communities acclimate to recurring changes in soil redox potential status.. Environ Microbiol. 12(12):3137-49.

Stout LM, Dodova EN, Tyson JF, Nüsslein K. 2010. Phytoprotective influence of bacteria on growth and cadmium accumulation in the aquatic plant Lemna minor.. Water Res. 44(17):4970-9.

Kalasin S, Dabkowski J, Nüsslein K, Santore MM. 2010. The role of nano-scale heterogeneous electrostatic interactions in initial bacterial adhesion from flow: a case study with Staphylococcus aureus.. Colloids Surf B Biointerfaces. 76(2):489-95.

2009

Nevin KP, Kim B-C, Glaven RH, Johnson JP, Woodard TL, Methé BA, Didonato RJ, Covalla SF, Franks AE, Liu A et al.. 2009. Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells.. PLoS One. 4(5):e5628.

Sagaram U S, Deangelis KM, Trivedi P, Andersen GL, Lu S-E, Wang N. 2009. Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing.. Appl Environ Microbiol. 75(6):1566-74.

Gabriel GJ, Maegerlein JA, Nelson CF, Dabkowski JM, Eren T, Nüsslein K, Tew GN. 2009. Comparison of facially amphiphilic versus segregated monomers in the design of antibacterial copolymers.. Chemistry. 15(2):433-9.

Lee S-W, Im J, Dispirito AA, Bodrossy L, Barcelona MJ, Semrau JD. 2009. Effect of nutrient and selective inhibitor amendments on methane oxidation, nitrous oxide production, and key gene presence and expression in landfill cover soils: characterization of the role of methanotrophs, nitrifiers, and denitrifiers.. Appl Microbiol Biotechnol. 85(2):389-403.

Madkour AE, Dabkowski JM, Nusslein K, Tew GN. 2009. Fast disinfecting antimicrobial surfaces.. Langmuir. 25(2):1060-7.

Aklujkar M, Krushkal J, DiBartolo G, Lapidus A, Land ML, Lovley DR. 2009. The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.. BMC Microbiol. 9:109.

Risso C, Sun J, Zhuang K, Mahadevan R, DeBoy R, Ismail W, Shrivastava S, Huot H, Kothari S, Daugherty S et al.. 2009. Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.. BMC Genomics. 10:447.

Risso C, Sun J, Zhuang K, Mahadevan R, DeBoy R, Ismail W, Shrivastava S, Huot H, Kothari S, Daugherty S et al.. 2009. Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.. BMC Genomics. 10:447.

Leang C, Krushkal J, Ueki T, Puljic M, Sun J, Juárez K, Núñez C, Reguera G, DiDonato R, Postier B et al.. 2009. Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens.. BMC Genomics. 10:331.

Rich SM, Leendertz FH, Xu G, LeBreton M, Djoko CF, Aminake MN, Takang EE, Diffo JLD, Pike BL, Rosenthal BM et al.. 2009. The origin of malignant malaria.. Proc Natl Acad Sci U S A. 106(35):14902-7.

Rich SM, Leendertz FH, Xu G, LeBreton M, Djoko CF, Aminake MN, Takang EE, Diffo JLD, Pike BL, Rosenthal BM et al.. 2009. The origin of malignant malaria.. Proc Natl Acad Sci U S A. 106(35):14902-7.

Welch A, Drummond F, Tewari S, Averill A, Burand JP. 2009. Presence and prevalence of viruses in local and migratory honeybees (Apis mellifera) in Massachusetts.. Appl Environ Microbiol. 75(24):7862-5.

Mouser PJ, Holmes DE, Perpetua LA, DiDonato R, Postier B, Liu A, Lovley DR. 2009. Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation.. ISME J. 3(4):454-65.

Deangelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK. 2009. Selective progressive response of soil microbial community to wild oat roots.. ISME J. 3(2):168-78.

Deangelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK. 2009. Selective progressive response of soil microbial community to wild oat roots.. ISME J. 3(2):168-78.

Holmes DE, O'Neil RA, Chavan MA, N'guessan LA, Vrionis HA, Perpetua LA, Larrahondo JM, DiDonato R, Liu A, Lovley DR. 2009. Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments.. ISME J. 3(2):216-30.

2008

Postier B, DiDonato R, Nevin KP, Liu A, Frank B, Lovley D, Methe BA. 2008. Benefits of in-situ synthesized microarrays for analysis of gene expression in understudied microorganisms.. J Microbiol Methods. 74(1):26-32.

Haveman SA, Didonato RJ, Villanueva L, Shelobolina ES, Postier BL, Xu B, Liu A, Lovley DR. 2008. Genome-wide gene expression patterns and growth requirements suggest that Pelobacter carbinolicus reduces Fe(III) indirectly via sulfide production.. Appl Environ Microbiol. 74(14):4277-84.

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