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Lekbach Y, Liu T, Li Y, Moradi M, Dou W, Xu D, Smith JA, Lovley DR.\'a0 2021.\'a0\'a0Microbial corrosion of metals: The corrosion microbiome.. Adv Microb Physiol. 78:317-390.\par \par Sun Y-L, Tang H-Y, Ribbe A, Duzhko V, Woodard TL, Ward JE, Bai Y, Nevin KP, Nonnenmann SS, Russell T et al..\'a0 2018.\'a0\'a0Conductive Composite Materials Fabricated from Microbially Produced Protein Nanowires.. Small. 14(44):e1802624.\par \par Holmes DE, Shrestha PM, Walker DJF, Dang Y, Nevin KP, Woodard TL, Lovley DR.\'a0 2017.\'a0\'a0Metatranscriptomic Evidence for Direct Interspecies Electron Transfer between Geobacter and Methanothrix Species in Methanogenic Rice Paddy Soils.. Appl Environ Microbiol. 83(9)\par \par Ueki T, DiDonato LN, Lovley DR.\'a0 2017.\'a0\'a0Toward establishing minimum requirements for extracellular electron transfer in Geobacter sulfurreducens.. FEMS Microbiol Lett. 364(9)\par \par Holmes DE, Dang Y, Walker DJF, Lovley DR.\'a0 2016.\'a0\'a0The electrically conductive pili of pecies are a recently evolved feature for extracellular electron transfer.. Microb Genom. 2(8):e000072.\par \par Dang Y, Holmes DE, Zhao Z, Woodard TL, Zhang Y, Sun D, Wang L-Y, Nevin KP, Lovley DR.\'a0 2016.\'a0\'a0Enhancing anaerobic digestion of complex organic waste with carbon-based conductive materials.. Bioresour Technol. 220:516-522.\par \par Zhao Z, Zhang Y, Holmes DE, Dang Y, Woodard TL, Nevin KP, Lovley DR.\'a0 2016.\'a0\'a0Potential enhancement of direct interspecies electron transfer for syntrophic metabolism of propionate and butyrate with biochar in up-flow anaerobic sludge blanket reactors.. Bioresour Technol. 209:148-56.\par \par DeAngelis KM, Pold G, Topcuoglu B, van Diepen L, Blanchard J, Melillo J, Frey S.\'a0 2015.\'a0\'a0Long-term warming drives loss of dominant taxa and rRNA copy number among soil bacteria.. Frontiers in Microbiology. \par \par Wang DT, Gruen DS, Lollar BSherwood, Hinrichs K-U, Stewart LC, Holden JF, Hristov AN, Pohlman JW, Morrill PL, K\'f6nneke M et al..\'a0 2015.\'a0\'a0Methane cycling. Nonequilibrium clumped isotope signals in microbial methane.. Science. 348(6233):428-31.\par \par Diao Y, Rodriguez V, Klingbeil M, Arsuaga J.\'a0 2015.\'a0\'a0Orientation of DNA Minicircles Balances Density and Topological Complexity in Kinetoplast DNA.. PLoS One. 10(6):e0130998.\par \par Fimlaid KA, Jensen O, M Donnelly L, M Siegrist S, Shen A.\'a0 2015.\'a0\'a0Regulation of Clostridium difficile Spore Formation by the SpoIIQ and SpoIIIA Proteins.. PLoS Genet. 11(10):e1005562.\par \par Muller M, Demeret C.\'a0 2014.\'a0\'a0CCHCR1 Interacts Specifically with the E2 Protein of Human Papillomavirus Type 16 on a Surface Overlapping BRD4 Binding. PLoS ONE. 9:e92581.\par \par Paula FS, Rodrigues JLM, Zhou J, Wu L, Mueller RC, Mirza BS, Bohannan BJM, N\'fcsslein K, Deng Y, Tiedje JM et al..\'a0 2014.\'a0\'a0Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities.. Mol Ecol. 23(12):2988-99.\par \par T Lin J, Breves EA, Dyar MD, Eecke HCVer, Jamieson JW, Holden JF.\'a0 2014.\'a0\'a0Magnetite formation from ferrihydrite by hyperthermophilic archaea from Endeavour Segment, Juan de Fuca Ridge hydrothermal vent chimneys.. Geobiology. 12(3):200-11.\par \par M Siegrist S, Steigedal M, Ahmad R, Mehra A, Dragset MS, Schuster BM, Philips JA, Carr SA, Rubin EJ.\'a0 2014.\'a0\'a0Mycobacterial Esx-3 requires multiple components for iron acquisition.. MBio. 5(3):e01073-14.\par \par Arsuaga J, Diao Y, Klingbeil M, Rodriguez V.\'a0 2014.\'a0\'a0Properties of Topological Networks of Flexible Polygonal Chains.. Mol Based Math Biol. 2:98-106.\par \par Zhang T, Bain TS, Barlett MA, Dar SA, Snoeyenbos-West OL, Nevin KP, Lovley DR.\'a0 2014.\'a0\'a0Sulfur oxidation to sulfate coupled with electron transfer to electrodes by Desulfuromonas strain TZ1.. Microbiology (Reading). 160(Pt 1):123-129.\par \par DeAngelis KM, Chivian D, Fortney J, Simmons BA, Hazen TC, Silver WL.\'a0 2013.\'a0\'a0Changes in microbial dynamics during long-term decomposition in tropical forests.. Soil Biology and Biochemistry. 66:60-68.\par \par Muller M, Cassonnet P, Favre M, Jacob Y, Demeret C.\'a0 2013.\'a0\'a0A Comparative Approach to Characterize the Landscape of Host-Pathogen Protein-Protein Interactions. Journal of Visualized Experiments. \par \par Deangelis KM, Sharma D, Varney R, Simmons B, Isern NG, Markilllie LM, Nicora C, Norbeck AD, Taylor RC, Aldrich JT et al..\'a0 2013.\'a0\'a0Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1.. Front Microbiol. 4:280.\par \par Williams KH, Wilkins MJ, A N'Guessan L, Arey B, Dodova E, Dohnalkova A, Holmes D, Lovley DR, Long PE.\'a0 2013.\'a0\'a0Field evidence of selenium bioreduction in a uranium-contaminated aquifer.. Environ Microbiol Rep. 5(3):444-52.\par \par Deangelis KM, D'haeseleer P, Chivian D, Simmons B, Arkin AP, Mavromatis K, Malfatti S, Tringe S, Hazen TC.\'a0 2013.\'a0\'a0Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.. Stand Genomic Sci. 7(3):382-98.\par \par Pold G, DeAngelis KM.\'a0 2013.\'a0\'a0Up against the wall: the effects of climate warming on soil microbial diversity and the potential for feedbacks to the carbon cycle.. Diversity. 5(2):409-425.\par \par Deangelis KM, Fortney JL, Borglin S, Silver WL, Simmons BA, Hazen TC.\'a0 2012.\'a0\'a0Anaerobic decomposition of switchgrass by tropical soil-derived feedstock-adapted consortia.. MBio. 3(1)\par \par Borglin S, Joyner D, Deangelis KM, Khudyakov J, D'haeseleer P, Joachimiak MP, Hazen T.\'a0 2012.\'a0\'a0Application of phenotypic microarrays to environmental microbiology.. Curr Opin Biotechnol. 23(1):41-8.\par \par Neveu G, Cassonnet P, Vidalain P-O, Rolloy C, Mendoza J, Jones L, Tangy F, Muller M, Demeret C, Tafforeau L et al..\'a0 2012.\'a0\'a0Comparative analysis of virus?host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. Methods. 58:349?359.\par \par Blanco M B, Elfawal MA, Durden LA, Beati L, Xu G, Godfrey LR, Rich SM.\'a0 2012.\'a0\'a0Genetic diversity of ixodid ticks parasitizing eastern mouse and dwarf lemurs in Madagascar, with descriptions of the larva, nymph and male of Ixodes lemuris (Acari: Ixodidae).. J Parasitol. \par \par Aklujkar M, Haveman SA, DiDonato R, Chertkov O, Han CS, Land ML, Brown P, Lovley DR.\'a0 2012.\'a0\'a0The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.. BMC Genomics. 13:690.\par \par Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP.\'a0 2012.\'a0\'a0Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus.. Proc Natl Acad Sci U S A. 109(32):E2173-82.\par \par Muller M, Demeret C.\'a0 2012.\'a0\'a0The \{HPV\} E2-Host Protein-Protein Interactions: A Complex Hijacking of the Cellular Network. The Open Virology Journal. 6:173?189.\par \par Muller M, Jacob Y, Jones L, Weiss A, Brino L, Chantier T, Lotteau V, Favre M, Demeret C.\'a0 2012.\'a0\'a0Large Scale Genotype Comparison of Human Papillomavirus E2-Host Interaction Networks Provides New Insights for E2 Molecular Functions. \{PLoS\} Pathogens. 8:e1002761.\par \par Liang Y, Van Nostrand JD, N'guessan LA, Peacock AD, Deng Y, Long PE, Resch TC, Wu L, He Z, Li G et al..\'a0 2012.\'a0\'a0Microbial functional gene diversity with a shift of subsurface redox conditions during In Situ uranium reduction.. Appl Environ Microbiol. 78(8):2966-72.\par \par Li Y, Kumar KN, Dabkowski JM, Corrigan M, Scott RW, N\'fcsslein K, Tew GN.\'a0 2012.\'a0\'a0New bactericidal surgical suture coating.. Langmuir. 28(33):12134-9.\par \par Deangelis KM, Firestone MK.\'a0 2012.\'a0\'a0Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes.. Appl Environ Microbiol. 78(7):2459-61.\par \par Tremblay P-L, Zhang T, Dar SA, Leang C, Lovley DR.\'a0 2012.\'a0\'a0The Rnf complex of Clostridium ljungdahlii is a proton-translocating ferredoxin:NAD+ oxidoreductase essential for autotrophic growth.. mBio. 4(1):e00406-12.\par \par Cassonnet P, Rolloy C, Neveu G, Vidalain P-O, Chantier T, Pellet J, Jones L, Muller M, Demeret C, Gaud G et al..\'a0 2011.\'a0\'a0Benchmarking a luciferase complementation assay for detecting protein complexes. Nature Methods. 8:990?992.\par \par Im J, Lee S-W, Yoon S, Dispirito AA, Semrau JD.\'a0 2011.\'a0\'a0Characterization of a novel facultative Methylocystis species capable of growth on methane, acetate and ethanol.. Environ Microbiol Rep. 3(2):174-81.\par \par Deangelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC.\'a0 2011.\'a0\'a0Characterization of trapped lignin-degrading microbes in tropical forest soil.. PLoS One. 6(4):e19306.\par \par Deangelis KM, D'haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport K W, Goodwin L et al..\'a0 2011.\'a0\'a0Complete genome sequence of "Enterobacter lignolyticus" SCF1.. Stand Genomic Sci. 5(1):69-85.\par \par Yoon S, Im J, Bandow N, Dispirito AA, Semrau JD.\'a0 2011.\'a0\'a0Constitutive expression of pMMO by Methylocystis strain SB2 when grown on multi-carbon substrates: implications for biodegradation of chlorinated ethenes.. Environ Microbiol Rep. 3(2):182-8.\par \par Shi S, Richardson AE, O'Callaghan M, Deangelis KM, Jones EE, Stewart A, Firestone MK, Condron LM.\'a0 2011.\'a0\'a0Effects of selected root exudate components on soil bacterial communities.. FEMS Microbiol Ecol. 77(3):600-10.\par \par Mackelprang R, Waldrop MP, Deangelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK.\'a0 2011.\'a0\'a0Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.. Nature. 480(7377):368-71.\par \par Deangelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME et al..\'a0 2011.\'a0\'a0PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.. Appl Environ Microbiol. 77(18):6313-22.\par \par Prilusky J, Hodis E, Canner D, Decatur WA, Oberholser K, Martz E, Berchanski A, Harel M, Sussman JL.\'a0 2011.\'a0\'a0Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.. J Struct Biol. 175(2):244-52.\par \par Patel KK, Vicencio AG, Du Z, Tsirilakis K, Salva PS, Webley WC.\'a0 2010.\'a0\'a0Infectious Chlamydia pneumoniae is associated with elevated interleukin-8 and airway neutrophilia in children with refractory asthma.. Pediatr Infect Dis J. 29(12):1093-8.\par \par Deangelis KM, Silver WL, Thompson AW, Firestone MK.\'a0 2010.\'a0\'a0Microbial communities acclimate to recurring changes in soil redox potential status.. Environ Microbiol. 12(12):3137-49.\par \par Stout LM, Dodova EN, Tyson JF, N\'fcsslein K.\'a0 2010.\'a0\'a0Phytoprotective influence of bacteria on growth and cadmium accumulation in the aquatic plant Lemna minor.. Water Res. 44(17):4970-9.\par \par Kalasin S, Dabkowski J, N\'fcsslein K, Santore MM.\'a0 2010.\'a0\'a0The role of nano-scale heterogeneous electrostatic interactions in initial bacterial adhesion from flow: a case study with Staphylococcus aureus.. Colloids Surf B Biointerfaces. 76(2):489-95.\par \par Nevin KP, Kim B-C, Glaven RH, Johnson JP, Woodard TL, Meth\'e9 BA, Didonato RJ, Covalla SF, Franks AE, Liu A et al..\'a0 2009.\'a0\'a0Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells.. PLoS One. 4(5):e5628.\par \par Sagaram U S, Deangelis KM, Trivedi P, Andersen GL, Lu S-E, Wang N.\'a0 2009.\'a0\'a0Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing.. Appl Environ Microbiol. 75(6):1566-74.\par \par Gabriel GJ, Maegerlein JA, Nelson CF, Dabkowski JM, Eren T, N\'fcsslein K, Tew GN.\'a0 2009.\'a0\'a0Comparison of facially amphiphilic versus segregated monomers in the design of antibacterial copolymers.. Chemistry. 15(2):433-9.\par \par Lee S-W, Im J, Dispirito AA, Bodrossy L, Barcelona MJ, Semrau JD.\'a0 2009.\'a0\'a0Effect of nutrient and selective inhibitor amendments on methane oxidation, nitrous oxide production, and key gene presence and expression in landfill cover soils: characterization of the role of methanotrophs, nitrifiers, and denitrifiers.. Appl Microbiol Biotechnol. 85(2):389-403.\par \par Madkour AE, Dabkowski JM, Nusslein K, Tew GN.\'a0 2009.\'a0\'a0Fast disinfecting antimicrobial surfaces.. Langmuir. 25(2):1060-7.\par \par Aklujkar M, Krushkal J, DiBartolo G, Lapidus A, Land ML, Lovley DR.\'a0 2009.\'a0\'a0The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.. BMC Microbiol. 9:109.\par \par Risso C, Sun J, Zhuang K, Mahadevan R, DeBoy R, Ismail W, Shrivastava S, Huot H, Kothari S, Daugherty S et al..\'a0 2009.\'a0\'a0Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.. BMC Genomics. 10:447.\par \par Leang C, Krushkal J, Ueki T, Puljic M, Sun J, Ju\'e1rez K, N\'fa\'f1ez C, Reguera G, DiDonato R, Postier B et al..\'a0 2009.\'a0\'a0Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens.. BMC Genomics. 10:331.\par \par Rich SM, Leendertz FH, Xu G, LeBreton M, Djoko CF, Aminake MN, Takang EE, Diffo JLD, Pike BL, Rosenthal BM et al..\'a0 2009.\'a0\'a0The origin of malignant malaria.. Proc Natl Acad Sci U S A. 106(35):14902-7.\par \par Welch A, Drummond F, Tewari S, Averill A, Burand JP.\'a0 2009.\'a0\'a0Presence and prevalence of viruses in local and migratory honeybees (Apis mellifera) in Massachusetts.. Appl Environ Microbiol. 75(24):7862-5.\par \par Mouser PJ, Holmes DE, Perpetua LA, DiDonato R, Postier B, Liu A, Lovley DR.\'a0 2009.\'a0\'a0Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation.. ISME J. 3(4):454-65.\par \par Deangelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK.\'a0 2009.\'a0\'a0Selective progressive response of soil microbial community to wild oat roots.. ISME J. 3(2):168-78.\par \par Holmes DE, O'Neil RA, Chavan MA, N'guessan LA, Vrionis HA, Perpetua LA, Larrahondo JM, DiDonato R, Liu A, Lovley DR.\'a0 2009.\'a0\'a0Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments.. ISME J. 3(2):216-30.\par \par Postier B, DiDonato R, Nevin KP, Liu A, Frank B, Lovley D, Methe BA.\'a0 2008.\'a0\'a0Benefits of in-situ synthesized microarrays for analysis of gene expression in understudied microorganisms.. J Microbiol Methods. 74(1):26-32.\par \par Haveman SA, Didonato RJ, Villanueva L, Shelobolina ES, Postier BL, Xu B, Liu A, Lovley DR.\'a0 2008.\'a0\'a0Genome-wide gene expression patterns and growth requirements suggest that Pelobacter carbinolicus reduces Fe(III) indirectly via sulfide production.. Appl Environ Microbiol. 74(14):4277-84.\par \par Izallalen M, Mahadevan R, Burgard A, Postier B, DiDonato R, Sun J, Schilling CH, Lovley DR.\'a0 2008.\'a0\'a0Geobacter sulfurreducens strain engineered for increased rates of respiration.. Metab Eng. 10(5):267-75.\par \par Kim B-C, Postier BL, Didonato RJ, Chaudhuri SK, Nevin KP, Lovley DR.\'a0 2008.\'a0\'a0Insights into genes involved in electricity generation in Geobacter sulfurreducens via whole genome microarray analysis of the OmcF-deficient mutant.. Bioelectrochemistry. 73(1):70-5.\par \par Ding Y-HR, Hixson KK, Aklujkar MA, Lipton MS, Smith RD, Lovley DR, Mester T.\'a0 2008.\'a0\'a0Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor.. Biochim Biophys Acta. 1784(12):1935-41.\par \par Gabriel GJ, Madkour AE, Dabkowski JM, Nelson CF, N\'fcsslein K, Tew GN.\'a0 2008.\'a0\'a0Synthetic mimic of antimicrobial peptide with nonmembrane-disrupting antibacterial properties.. Biomacromolecules. 9(11):2980-3.\par \par Krushkal J, Yan B, DiDonato LN, Puljic M, Nevin KP, Woodard TL, Adkins RM, Meth\'e9 BA, Lovley DR.\'a0 2007.\'a0\'a0Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a relGsu mutant.. 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