Publications

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2010

Sena CBC, Fukuda T, Miyanagi K, Matsumoto S, Kobayashi K, Murakami Y, Maeda Y, Kinoshita T, Morita YS. 2010. Controlled expression of branch-forming mannosyltransferase is critical for mycobacterial lipoarabinomannan biosynthesis.. J Biol Chem. 285(18):13326-36.

2011

Im J, Lee S-W, Yoon S, Dispirito AA, Semrau JD. 2011. Characterization of a novel facultative Methylocystis species capable of growth on methane, acetate and ethanol.. Environ Microbiol Rep. 3(2):174-81.

Deangelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC. 2011. Characterization of trapped lignin-degrading microbes in tropical forest soil.. PLoS One. 6(4):e19306.

Patel KK, Salva PS, Webley WC. 2011. Colonization of paediatric lower respiratory tract with genital Mycoplasma species.. Respirology. 16(7):1081-7.

Deangelis KM, D'haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport K W, Goodwin L et al.. 2011. Complete genome sequence of "Enterobacter lignolyticus" SCF1.. Stand Genomic Sci. 5(1):69-85.

Yoon S, Im J, Bandow N, Dispirito AA, Semrau JD. 2011. Constitutive expression of pMMO by Methylocystis strain SB2 when grown on multi-carbon substrates: implications for biodegradation of chlorinated ethenes.. Environ Microbiol Rep. 3(2):182-8.

Tremblay P-L, Summers ZM, Glaven RH, Nevin KP, Zengler K, Barrett CL, Qiu Y, Palsson BO, Lovley DR. 2011. A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.. Environ Microbiol. 13(1):13-23.

2012

Neveu G, Cassonnet P, Vidalain P-O, Rolloy C, Mendoza J, Jones L, Tangy F, Muller M, Demeret C, Tafforeau L et al.. 2012. Comparative analysis of virus–host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. Methods. 58:349–359.

Butler JE, Young ND, Aklujkar M, Lovley DR. 2012. Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production.. BMC Genomics. 13:471.

Jung J-H, Lee J-H, Holden JF, Seo D-H, Shin H, Kim H-Y, Kim W, Ryu S, Park C-S. 2012. Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge.. J Bacteriol. 194(16):4434-5.

Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S. 2012. Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.

2013

DeAngelis KM, Chivian D, Fortney J, Simmons BA, Hazen TC, Silver WL. 2013. Changes in microbial dynamics during long-term decomposition in tropical forests.. Soil Biology and Biochemistry. 66:60-68.

Nagarajan H, Embree M, Rotaru A-E, Shrestha PM, Feist AM, Palsson BØ, Lovley DR, Zengler K. 2013. Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association.. Nat Commun. 4:2809.

Giloteaux L, Holmes DE, Williams KH, Wrighton KC, Wilkins MJ, Montgomery AP, Smith JA, Orellana R, Thompson CA, Roper TJ et al.. 2013. Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation.. ISME J. 7(2):370-83.

Nagarajan H, Sahin M, Nogales J, Latif H, Lovley DR, Ebrahim A, Zengler K. 2013. Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii.. Microb Cell Fact. 12:118.

Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Juárez K, Cho B-K, Elkins JG, Nevin KP, Barrett CL et al.. 2013. Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.. Nat Commun. 4:1755.

Muller M, Cassonnet P, Favre M, Jacob Y, Demeret C. 2013. A Comparative Approach to Characterize the Landscape of Host-Pathogen Protein-Protein Interactions. Journal of Visualized Experiments.

Rodrigues JLM, Pellizari VH, Mueller R, Baek K, Jesus Eda C, Paula FS, Mirza B, Hamaoui GS, Tsai SMui, Feigl B et al.. 2013. Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities.. Proc Natl Acad Sci U S A. 110(3):988-93.

Fukuda T, Matsumura T, Ato M, Hamasaki M, Nishiuchi Y, Murakami Y, Maeda Y, Yoshimori T, Matsumoto S, Kobayashi K et al.. 2013. Critical roles for lipomannan and lipoarabinomannan in cell wall integrity of mycobacteria and pathogenesis of tuberculosis.. MBio. 4(1)

2014

Chen S, Rotaru A-E, Liu F, Philips J, Woodard TL, Nevin KP, Lovley DR. 2014. Carbon cloth stimulates direct interspecies electron transfer in syntrophic co-cultures.. Bioresour Technol. 173:82-86.

Muller M, Demeret C. 2014. CCHCR1 Interacts Specifically with the E2 Protein of Human Papillomavirus Type 16 on a Surface Overlapping BRD4 Binding. PLoS ONE. 9:e92581.

Jung J-H, Kim Y-T, Jeon E-J, Seo D-H, Hensley SA, Holden JF, Lee J-H, Park C-S. 2014. Complete genome sequence of hyperthermophilic archaeon Thermococcus sp. ES1.. J Biotechnol. 174C:14-15.

Feist AM, Nagarajan H, Rotaru A-E, Tremblay P-L, Zhang T, Nevin KP, Lovley DR, Zengler K. 2014. Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens.. PLoS Comput Biol. 10(4):e1003575.

Ueki T, Nevin KP, Woodard TL, Lovley DR. 2014. Converting carbon dioxide to butyrate with an engineered strain of Clostridium ljungdahlii.. mBio. 5(5):e01636-14.

Shrestha PMalla, Malvankar NS, Werner JJ, Franks AE, Elena-Rotaru A, Shrestha M, Liu F, Nevin KP, Angenent LT, Lovley DR. 2014. Correlation between microbial community and granule conductivity in anaerobic bioreactors for brewery wastewater treatment.. Bioresour Technol. 174:306-10.

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