Publications

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1999

Wood TI, Griffith KL, Fawcett WP, Jair KW, Schneider TD, Wolf RE. 1999. Interdependence of the position and orientation of SoxS binding sites in the transcriptional activation of the class I subset of Escherichia coli superoxide-inducible promoters.. Mol Microbiol. 34(3):414-30.

Rooney-Varga JN, Anderson RT, Fraga JL, Ringelberg D, Lovley DR. 1999. Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer.. Appl Environ Microbiol. 65(7):3056-63.

Liu J, Xu L, Sandler SJ, Marians KJ. 1999. Replication fork assembly at recombination intermediates is required for bacterial growth.. Proc Natl Acad Sci U S A. 96(7):3552-5.

Nüsslein K, Tiedje JM. 1999. Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil.. Appl Environ Microbiol. 65(8):3622-6.

Stolz JF, Ellis DJ, Blum JS, Ahmann D, Lovley DR, Oremland RS. 1999. Sulfurospirillum barnesii sp. nov. and Sulfurospirillum arsenophilum sp. nov., new members of the Sulfurospirillum clade of the epsilon Proteobacteria.. Int J Syst Bacteriol. 49 Pt 3:1177-80.

2000

Widmer G, Akiyoshi D, Buckholt MA, Feng X, Rich SM, Deary KM, Bowman CA, Xu P, Wang Y, Wang X et al.. 2000. Animal propagation and genomic survey of a genotype 1 isolate of Cryptosporidium parvum.. Mol Biochem Parasitol. 108(2):187-97.

Feng X, Rich SM, Akiyoshi D, Tumwine JK, Kekitiinwa A, Nabukeera N, Tzipori S, Widmer G. 2000. Extensive polymorphism in Cryptosporidium parvum identified by multilocus microsatellite analysis.. Appl Environ Microbiol. 66(8):3344-9.

Ayala FJ, Rich SM. 2000. Genetic variation and the recent worldwide expansion of Plasmodium falciparum.. Gene. 261(1):161-70.

Rich SM, Ferreira MU, Ayala FJ. 2000. The origin of antigenic diversity in Plasmodium falciparum.. Parasitol Today. 16(9):390-6.

Rich SM, Ayala FJ. 2000. Population structure and recent evolution of Plasmodium falciparum.. Proc Natl Acad Sci U S A. 97(13):6994-7001.

2001

Coates JD, Bhupathiraju VK, Achenbach LA, Mclnerney MJ, Lovley DR. 2001. Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers.. Int J Syst Evol Microbiol. 51(Pt 2):581-8.

Kaufmann F, Lovley DR. 2001. Isolation and characterization of a soluble NADPH-dependent Fe(III) reductase from Geobacter sulfurreducens.. J Bacteriol. 183(15):4468-76.

Magnuson TS, Isoyama N, Hodges-Myerson AL, Davidson G, Maroney MJ, Geesey GG, Lovley DR. 2001. Isolation, characterization and gene sequence analysis of a membrane-associated 89 kDa Fe(III) reducing cytochrome c from Geobacter sulfurreducens.. Biochem J. 359(Pt 1):147-52.

Griffith KL, Wolf RE. 2001. Systematic mutagenesis of the DNA binding sites for SoxS in the Escherichia coli zwf and fpr promoters: identifying nucleotides required for DNA binding and transcription activation.. Mol Microbiol. 40(5):1141-54.

2002

Burke WD, Malik HS, Rich SM, Eickbush TH. 2002. Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lamblia.. Mol Biol Evol. 19(5):619-30.

Finneran KT, Forbush HM, VanPraagh C GV, Lovley DR. 2002. Desulfitobacterium metallireducens sp. nov., an anaerobic bacterium that couples growth to the reduction of metals and humic acids as well as chlorinated compounds.. Int J Syst Evol Microbiol. 52(Pt 6):1929-35.

Kashefi K, Tor JM, Holmes DE, Gaw Van Praagh CV, Reysenbach A-L, Lovley DR. 2002. Geoglobus ahangari gen. nov., sp. nov., a novel hyperthermophilic archaeon capable of oxidizing organic acids and growing autotrophically on hydrogen with Fe(III) serving as the sole electron acceptor.. Int J Syst Evol Microbiol. 52(Pt 3):719-28.

Tender LM, Reimers CE, Stecher HA, Holmes DE, Bond DR, Lowy DA, Pilobello K, Fertig SJ, Lovley DR. 2002. Harnessing microbially generated power on the seafloor.. Nat Biotechnol. 20(8):821-5.

Chapelle FH, O'Neill K, Bradley PM, Methé BA, Ciufo SA, Knobel LRL, Lovley DR. 2002. A hydrogen-based subsurface microbial community dominated by methanogens.. Nature. 415(6869):312-5.

Klingbeil MM, Motyka SA, Englund PT. 2002. Multiple mitochondrial DNA polymerases in Trypanosoma brucei.. Mol Cell. 10(1):175-86.

Kashefi K, Holmes DE, Reysenbach A-L, Lovley DR. 2002. Use of Fe(III) as an electron acceptor to recover previously uncultured hyperthermophiles: isolation and characterization of Geothermobacterium ferrireducens gen. nov., sp. nov.. Appl Environ Microbiol. 68(4):1735-42.

2003

Lloyd JR, Leang C, Hodges Myerson AL, Coppi MV, Cuifo S, Methe B, Sandler SJ, Lovley DR. 2003. Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens.. Biochem J. 369(Pt 1):153-61.

Gardocki M E, Lopes JM. 2003. Expression of the yeast PIS1 gene requires multiple regulatory elements including a Rox1p binding site.. J Biol Chem. 278(40):38646-52.

Jara M, Núñez C, Campoy S, Fernández de Henestrosa AR, Lovley DR, Barbé J. 2003. Geobacter sulfurreducens has two autoregulated lexA genes whose products do not bind the recA promoter: differing responses of lexA and recA to DNA damage.. J Bacteriol. 185(8):2493-502.

Lim H, Eng J, Yates JR, Tollaksen SL, Giometti CS, Holden JF, Adams MWW, Reich CI, Olsen GJ, Hays LG. 2003. Identification of 2D-gel proteins: a comparison of MALDI/TOF peptide mass mapping to mu LC-ESI tandem mass spectrometry.. J Am Soc Mass Spectrom. 14(9):957-70.

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