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S

Meniche X, Otten R, M Siegrist S, Baer CE, Murphy KC, Bertozzi CR, Sassetti CM. 2014. Subpolar addition of new cell wall is directed by DivIVA in mycobacteria.. Proc Natl Acad Sci U S A. 111(31):E3243-51.

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Sandler SJ, McCool JD, Do TT, Johansen RU. 2001. PriA mutations that affect PriA-PriC function during replication restart.. Mol Microbiol. 41(3):697-704.

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Chen M, Lopes JM. 2007. Multiple basic helix-loop-helix proteins regulate expression of the ENO1 gene of Saccharomyces cerevisiae.. Eukaryot Cell. 6(5):786-96.

Zhao J, Fang Y, Scheibe TD, Lovley DR, Mahadevan R. 2010. Modeling and sensitivity analysis of electron capacitance for Geobacter in sedimentary environments.. J Contam Hydrol. 112(1-4):30-44.

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Morita YS, Fukuda T, Sena CBC, Yamaryo-Botte Y, McConville MJ, Kinoshita T. 2011. Inositol lipid metabolism in mycobacteria: biosynthesis and regulatory mechanisms.. Biochim Biophys Acta. 1810(6):630-41.

Mahadevan R, Palsson BØ, Lovley DR. 2011. In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling.. Nat Rev Microbiol. 9(1):39-50.

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Lovley DR. 2017. Happy together: microbial communities that hook up to swap electrons.. ISME J. 11(2):327-336.

Lopper M, Boonsombat R, Sandler SJ, Keck JL. 2007. A hand-off mechanism for primosome assembly in replication restart.. Mol Cell. 26(6):781-93.

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Izallalen M, Mahadevan R, Burgard A, Postier B, DiDonato R, Sun J, Schilling CH, Lovley DR. 2008. Geobacter sulfurreducens strain engineered for increased rates of respiration.. Metab Eng. 10(5):267-75.

Hancock LC, Behta RP, Lopes JM. 2006. Genomic analysis of the Opi- phenotype.. Genetics. 173(2):621-34.

Yan B, Lovley DR, Krushkal J. 2007. Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.. Biosystems. 90(2):421-41.

Zhuang K, Izallalen M, Mouser P, Richter H, Risso C, Mahadevan R, Lovley DR. 2011. Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments.. ISME J. 5(2):305-16.

Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R. 2009. Genome-scale constraint-based modeling of Geobacter metallireducens.. BMC Syst Biol. 3:15.

Risso C, Sun J, Zhuang K, Mahadevan R, DeBoy R, Ismail W, Shrivastava S, Huot H, Kothari S, Daugherty S et al.. 2009. Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.. BMC Genomics. 10:447.

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Lovley DR. 2008. Extracellular electron transfer: wires, capacitors, iron lungs, and more.. Geobiology. 6(3):225-31.

Gardocki M E, Lopes JM. 2003. Expression of the yeast PIS1 gene requires multiple regulatory elements including a Rox1p binding site.. J Biol Chem. 278(40):38646-52.

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Fang Y, Scheibe TD, Mahadevan R, Garg S, Long PE, Lovley DR. 2011. Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model.. J Contam Hydrol. 122(1-4):96-103.

Long J E, Renzette N, Centore RC, Sandler SJ. 2008. Differential requirements of two recA mutants for constitutive SOS expression in Escherichia coli K-12.. PLoS One. 3(12):e4100.

Vriezen JAC, de Bruijn FJ, Nüsslein K. 2006. Desiccation responses and survival of Sinorhizobium meliloti USDA 1021 in relation to growth phase, temperature, chloride and sulfate availability.. Lett Appl Microbiol. 42(2):172-8.

Mahadevan R, Lovley DR. 2008. The degree of redundancy in metabolic genes is linked to mode of metabolism.. Biophys J. 94(4):1216-20.

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Lovley DR. 2005. Crystal ball. In silico biology meets in situ phenomenology.. Environ Microbiol. 7(4):478-9.

Scheibe TD, Mahadevan R, Fang Y, Garg S, Long PE, Lovley DR. 2009. Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.. Microb Biotechnol. 2(2):274-86.

Feist AM, Nagarajan H, Rotaru A-E, Tremblay P-L, Zhang T, Nevin KP, Lovley DR, Zengler K. 2014. Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens.. PLoS Comput Biol. 10(4):e1003575.

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