Publications

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2012
Burand JP, Kim W, Afonso CL, Tulman ER, Kutish GF, Lu Z, Rock DL.  2012.  Analysis of the genome of the sexually transmitted insect virus Helicoverpa zea nudivirus 2.. Viruses. 4(1):28-61.
Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.
Aklujkar M, Haveman SA, DiDonato R, Chertkov O, Han CS, Land ML, Brown P, Lovley DR.  2012.  The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.. BMC Genomics. 13:690.
Richter LV, Sandler SJ, Weis RM.  2012.  Two isoforms of Geobacter sulfurreducens PilA have distinct roles in pilus biogenesis, cytochrome localization, extracellular electron transfer, and biofilm formation.. J Bacteriol. 194(10):2551-63.
2011
Burand JP, Kim W, Welch A, Elkinton JS.  2011.  Identification of a nucleopolyhedrovirus in winter moth populations from Massachusetts.. J Invertebr Pathol. 108(3):217-9.
Marceau AH, Bahng S, Massoni SC, George NP, Sandler SJ, Marians KJ, Keck JL.  2011.  Structure of the SSB-DNA polymerase III interface and its role in DNA replication.. EMBO J. 30(20):4236-47.
2010
Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N.  2010.  ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.. Nucleic Acids Res. 38(Web Server issue):W529-33.
Ueki T, Lovley DR.  2010.  Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species.. Nucleic Acids Res. 38(3):810-21.
Krushkal J, Juárez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T.  2010.  Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.. Gene. 469(1-2):31-44.
Aklujkar M, Lovley DR.  2010.  Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus.. BMC Evol Biol. 10:230.
2009
Lee S-W, Im J, Dispirito AA, Bodrossy L, Barcelona MJ, Semrau JD.  2009.  Effect of nutrient and selective inhibitor amendments on methane oxidation, nitrous oxide production, and key gene presence and expression in landfill cover soils: characterization of the role of methanotrophs, nitrifiers, and denitrifiers.. Appl Microbiol Biotechnol. 85(2):389-403.
Qu Y, Brown P, Barbe JF, Puljic M, Merino E, Adkins RM, Lovley DR, Krushkal J.  2009.  GSEL version 2, an online genome-wide query system of operon organization and regulatory sequence elements of Geobacter sulfurreducens.. OMICS. 13(5):439-49.
2008
Segura D, Mahadevan R, Juárez K, Lovley DR.  2008.  Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.. PLoS Comput Biol. 4(2):e36.
Griffith KL, Grossman AD.  2008.  A degenerate tripartite DNA-binding site required for activation of ComA-dependent quorum response gene expression in Bacillus subtilis.. J Mol Biol. 381(2):261-75.
2007
Krushkal J, Yan B, DiDonato LN, Puljic M, Nevin KP, Woodard TL, Adkins RM, Methé BA, Lovley DR.  2007.  Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a relGsu mutant.. Funct Integr Genomics. 7(3):229-55.
Ueki T, Lovley DR.  2007.  Heat-shock sigma factor RpoH from Geobacter sulfurreducens.. Microbiology. 153(Pt 3):838-46.
Waldron PJ, Petsch ST, Martini AM, Nüsslein K, Nüslein K.  2007.  Salinity constraints on subsurface archaeal diversity and methanogenesis in sedimentary rock rich in organic matter.. Appl Environ Microbiol. 73(13):4171-9.
2006
Yan B, Núñez C, Ueki T, Esteve-Núñez A, Puljic M, Adkins RM, Methé BA, Lovley DR, Krushkal J.  2006.  Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.
Izquierdo JA, Nüsslein K.  2006.  Distribution of extensive nifH gene diversity across physical soil microenvironments.. Microb Ecol. 51(4):441-52.
2005
Leang C, Adams LA, Chin K-J, Nevin KP, Methé BA, Webster J, Sharma ML, Lovley DR.  2005.  Adaptation to disruption of the electron transfer pathway for Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 187(17):5918-26.
Afkar E, Reguera G, Schiffer M, Lovley DR.  2005.  A novel Geobacteraceae-specific outer membrane protein J (OmpJ) is essential for electron transport to Fe(III) and Mn(IV) oxides in Geobacter sulfurreducens.. BMC Microbiol. 5:41.
Mehta T, Coppi MV, Childers SE, Lovley DR.  2005.  Outer membrane c-type cytochromes required for Fe(III) and Mn(IV) oxide reduction in Geobacter sulfurreducens.. Appl Environ Microbiol. 71(12):8634-41.
Stout LM, Nüsslein K.  2005.  Shifts in rhizoplane communities of aquatic plants after cadmium exposure.. Appl Environ Microbiol. 71(5):2484-92.
2004
Chin K-J, Esteve-Núñez A, Leang C, Lovley DR.  2004.  Direct correlation between rates of anaerobic respiration and levels of mRNA for key respiratory genes in Geobacter sulfurreducens.. Appl Environ Microbiol. 70(9):5183-9.
McCool JD, Ford CC, Sandler SJ.  2004.  A dnaT mutant with phenotypes similar to those of a priA2::kan mutant in Escherichia coli K-12.. Genetics. 167(2):569-78.

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