{\rtf1\ansi\deff0\deftab360

{\fonttbl
{\f0\fswiss\fcharset0 Arial}
{\f1\froman\fcharset0 Times New Roman}
{\f2\fswiss\fcharset0 Verdana}
{\f3\froman\fcharset2 Symbol}
}

{\colortbl;
\red0\green0\blue0;
}

{\info
{\author Biblio 7.x}{\operator }{\title Biblio RTF Export}}

\f1\fs24
\paperw11907\paperh16839
\pgncont\pgndec\pgnstarts1\pgnrestart
Burand JP, Kim W, Afonso CL, Tulman ER, Kutish GF, Lu Z, Rock DL.\'a0 2012.\'a0\'a0Analysis of the genome of the sexually transmitted insect virus Helicoverpa zea nudivirus 2.. Viruses. 4(1):28-61.\par \par Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S.\'a0 2012.\'a0\'a0Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.\par \par Aklujkar M, Haveman SA, DiDonato R, Chertkov O, Han CS, Land ML, Brown P, Lovley DR.\'a0 2012.\'a0\'a0The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.. BMC Genomics. 13:690.\par \par Richter LV, Sandler SJ, Weis RM.\'a0 2012.\'a0\'a0Two isoforms of Geobacter sulfurreducens PilA have distinct roles in pilus biogenesis, cytochrome localization, extracellular electron transfer, and biofilm formation.. J Bacteriol. 194(10):2551-63.\par \par Burand JP, Kim W, Welch A, Elkinton JS.\'a0 2011.\'a0\'a0Identification of a nucleopolyhedrovirus in winter moth populations from Massachusetts.. J Invertebr Pathol. 108(3):217-9.\par \par Marceau AH, Bahng S, Massoni SC, George NP, Sandler SJ, Marians KJ, Keck JL.\'a0 2011.\'a0\'a0Structure of the SSB-DNA polymerase III interface and its role in DNA replication.. EMBO J. 30(20):4236-47.\par \par Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N.\'a0 2010.\'a0\'a0ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.. Nucleic Acids Res. 38(Web Server issue):W529-33.\par \par Ueki T, Lovley DR.\'a0 2010.\'a0\'a0Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species.. Nucleic Acids Res. 38(3):810-21.\par \par Krushkal J, Ju\'e1rez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T.\'a0 2010.\'a0\'a0Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.. Gene. 469(1-2):31-44.\par \par Aklujkar M, Lovley DR.\'a0 2010.\'a0\'a0Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus.. BMC Evol Biol. 10:230.\par \par Lee S-W, Im J, Dispirito AA, Bodrossy L, Barcelona MJ, Semrau JD.\'a0 2009.\'a0\'a0Effect of nutrient and selective inhibitor amendments on methane oxidation, nitrous oxide production, and key gene presence and expression in landfill cover soils: characterization of the role of methanotrophs, nitrifiers, and denitrifiers.. Appl Microbiol Biotechnol. 85(2):389-403.\par \par Qu Y, Brown P, Barbe JF, Puljic M, Merino E, Adkins RM, Lovley DR, Krushkal J.\'a0 2009.\'a0\'a0GSEL version 2, an online genome-wide query system of operon organization and regulatory sequence elements of Geobacter sulfurreducens.. OMICS. 13(5):439-49.\par \par Segura D, Mahadevan R, Ju\'e1rez K, Lovley DR.\'a0 2008.\'a0\'a0Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.. PLoS Comput Biol. 4(2):e36.\par \par Griffith KL, Grossman AD.\'a0 2008.\'a0\'a0A degenerate tripartite DNA-binding site required for activation of ComA-dependent quorum response gene expression in Bacillus subtilis.. J Mol Biol. 381(2):261-75.\par \par Krushkal J, Yan B, DiDonato LN, Puljic M, Nevin KP, Woodard TL, Adkins RM, Meth\'e9 BA, Lovley DR.\'a0 2007.\'a0\'a0Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a relGsu mutant.. Funct Integr Genomics. 7(3):229-55.\par \par Ueki T, Lovley DR.\'a0 2007.\'a0\'a0Heat-shock sigma factor RpoH from Geobacter sulfurreducens.. Microbiology. 153(Pt 3):838-46.\par \par Waldron PJ, Petsch ST, Martini AM, N\'fcsslein K, N\'fcslein K.\'a0 2007.\'a0\'a0Salinity constraints on subsurface archaeal diversity and methanogenesis in sedimentary rock rich in organic matter.. Appl Environ Microbiol. 73(13):4171-9.\par \par Yan B, N\'fa\'f1ez C, Ueki T, Esteve-N\'fa\'f1ez A, Puljic M, Adkins RM, Meth\'e9 BA, Lovley DR, Krushkal J.\'a0 2006.\'a0\'a0Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.\par \par Izquierdo JA, N\'fcsslein K.\'a0 2006.\'a0\'a0Distribution of extensive nifH gene diversity across physical soil microenvironments.. Microb Ecol. 51(4):441-52.\par \par Leang C, Adams LA, Chin K-J, Nevin KP, Meth\'e9 BA, Webster J, Sharma ML, Lovley DR.\'a0 2005.\'a0\'a0Adaptation to disruption of the electron transfer pathway for Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 187(17):5918-26.\par \par Afkar E, Reguera G, Schiffer M, Lovley DR.\'a0 2005.\'a0\'a0A novel Geobacteraceae-specific outer membrane protein J (OmpJ) is essential for electron transport to Fe(III) and Mn(IV) oxides in Geobacter sulfurreducens.. BMC Microbiol. 5:41.\par \par Mehta T, Coppi MV, Childers SE, Lovley DR.\'a0 2005.\'a0\'a0Outer membrane c-type cytochromes required for Fe(III) and Mn(IV) oxide reduction in Geobacter sulfurreducens.. Appl Environ Microbiol. 71(12):8634-41.\par \par Stout LM, N\'fcsslein K.\'a0 2005.\'a0\'a0Shifts in rhizoplane communities of aquatic plants after cadmium exposure.. Appl Environ Microbiol. 71(5):2484-92.\par \par Chin K-J, Esteve-N\'fa\'f1ez A, Leang C, Lovley DR.\'a0 2004.\'a0\'a0Direct correlation between rates of anaerobic respiration and levels of mRNA for key respiratory genes in Geobacter sulfurreducens.. Appl Environ Microbiol. 70(9):5183-9.\par \par McCool JD, Ford CC, Sandler SJ.\'a0 2004.\'a0\'a0A dnaT mutant with phenotypes similar to those of a priA2::kan mutant in Escherichia coli K-12.. Genetics. 167(2):569-78.\par \par Griffith KL, Wolf RE.\'a0 2004.\'a0\'a0Genetic evidence for pre-recruitment as the mechanism of transcription activation by SoxS of Escherichia coli: the dominance of DNA binding mutations of SoxS.. J Mol Biol. 344(1):1-10.\par \par Holmes DE, Bond DR, O'Neil RA, Reimers CE, Tender LR, Lovley DR.\'a0 2004.\'a0\'a0Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments.. Microb Ecol. 48(2):178-90.\par \par Griffith KL, Shah IM, Wolf RE.\'a0 2004.\'a0\'a0Proteolytic degradation of Escherichia coli transcription activators SoxS and MarA as the mechanism for reversing the induction of the superoxide (SoxRS) and multiple antibiotic resistance (Mar) regulons.. Mol Microbiol. 51(6):1801-16.\par \par N\'fa\'f1ez C, Adams L, Childers S, Lovley DR.\'a0 2004.\'a0\'a0The RpoS sigma factor in the dissimilatory Fe(III)-reducing bacterium Geobacter sulfurreducens.. J Bacteriol. 186(16):5543-6.\par \par Lloyd JR, Leang C, Hodges Myerson AL, Coppi MV, Cuifo S, Methe B, Sandler SJ, Lovley DR.\'a0 2003.\'a0\'a0Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens.. Biochem J. 369(Pt 1):153-61.\par \par Gardocki M E, Lopes JM.\'a0 2003.\'a0\'a0Expression of the yeast PIS1 gene requires multiple regulatory elements including a Rox1p binding site.. J Biol Chem. 278(40):38646-52.\par \par Saxowsky TT, Choudhary G, Klingbeil MM, Englund PT.\'a0 2003.\'a0\'a0Trypanosoma brucei has two distinct mitochondrial DNA polymerase beta enzymes.. J Biol Chem. 278(49):49095-101.\par \par Burke WD, Malik HS, Rich SM, Eickbush TH.\'a0 2002.\'a0\'a0Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lamblia.. Mol Biol Evol. 19(5):619-30.\par \par Griffith KL, Wolf RE.\'a0 2002.\'a0\'a0A comprehensive alanine scanning mutagenesis of the Escherichia coli transcriptional activator SoxS: identifying amino acids important for DNA binding and transcription activation.. J Mol Biol. 322(2):237-57.\par \par Rich SM, Sawyer SA, Barbour AG.\'a0 2001.\'a0\'a0Antigen polymorphism in Borrelia hermsii, a clonal pathogenic bacterium.. Proc Natl Acad Sci U S A. 98(26):15038-43.\par \par Griffith KL, Wolf RE.\'a0 2001.\'a0\'a0Systematic mutagenesis of the DNA binding sites for SoxS in the Escherichia coli zwf and fpr promoters: identifying nucleotides required for DNA binding and transcription activation.. Mol Microbiol. 40(5):1141-54.\par \par Feng X, Rich SM, Akiyoshi D, Tumwine JK, Kekitiinwa A, Nabukeera N, Tzipori S, Widmer G.\'a0 2000.\'a0\'a0Extensive polymorphism in Cryptosporidium parvum identified by multilocus microsatellite analysis.. Appl Environ Microbiol. 66(8):3344-9.\par \par Ayala FJ, Rich SM.\'a0 2000.\'a0\'a0Genetic variation and the recent worldwide expansion of Plasmodium falciparum.. Gene. 261(1):161-70.\par \par Sandler SJ.\'a0 2000.\'a0\'a0Multiple genetic pathways for restarting DNA replication forks in Escherichia coli K-12.. Genetics. 155(2):487-97.\par \par Rich SM, Ferreira MU, Ayala FJ.\'a0 2000.\'a0\'a0The origin of antigenic diversity in Plasmodium falciparum.. Parasitol Today. 16(9):390-6.\par \par Rich SM, Ayala FJ.\'a0 2000.\'a0\'a0Population structure and recent evolution of Plasmodium falciparum.. Proc Natl Acad Sci U S A. 97(13):6994-7001.\par \par Ayala FJ, Escalante AA, Rich SM.\'a0 1999.\'a0\'a0Evolution of Plasmodium and the recent origin of the world populations of Plasmodium falciparum.. Parassitologia. 41(1-3):55-68.\par \par Wood TI, Griffith KL, Fawcett WP, Jair KW, Schneider TD, Wolf RE.\'a0 1999.\'a0\'a0Interdependence of the position and orientation of SoxS binding sites in the transcriptional activation of the class I subset of Escherichia coli superoxide-inducible promoters.. Mol Microbiol. 34(3):414-30.\par \par Liu J, Xu L, Sandler SJ, Marians KJ.\'a0 1999.\'a0\'a0Replication fork assembly at recombination intermediates is required for bacterial growth.. Proc Natl Acad Sci U S A. 96(7):3552-5.\par \par Coates JD, Ellis DJ, Blunt-Harris EL, Gaw CV, Roden EE, Lovley DR.\'a0 1998.\'a0\'a0Recovery of humic-reducing bacteria from a diversity of environments.. Appl Environ Microbiol. 64(4):1504-9.\par \par Rich SM, Rosenthal BM, Telford SR, Spielman A, Hartl DL, Ayala FJ.\'a0 1997.\'a0\'a0Heterogeneity of the internal transcribed spacer (ITS-2) region within individual deer ticks.. Insect Mol Biol. 6(2):123-9.\par \par Coates JD, Phillips EJ, Lonergan DJ, Jenter H, Lovley DR.\'a0 1996.\'a0\'a0Isolation of Geobacter species from diverse sedimentary environments.. Appl Environ Microbiol. 62(5):1531-6.\par \par Boyd EF, Hill CW, Rich SM, Hartl DL.\'a0 1996.\'a0\'a0Mosaic structure of plasmids from natural populations of Escherichia coli.. Genetics. 143(3):1091-100.\par \par Armstrong PM, Rich SM, Smith RD, Hartl DL, Spielman A, Telford SR.\'a0 1996.\'a0\'a0A new Borrelia infecting Lone Star ticks.. Lancet. 347(8993):67-8.\par \par Lonergan DJ, Jenter HL, Coates JD, Phillips EJ, Schmidt TM, Lovley DR.\'a0 1996.\'a0\'a0Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria.. J Bacteriol. 178(8):2402-8.\par \par Sandler SJ, Satin LH, Samra HS, Clark AJ.\'a0 1996.\'a0\'a0recA-like genes from three archaean species with putative protein products similar to Rad51 and Dmc1 proteins of the yeast Saccharomyces cerevisiae.. Nucleic Acids Res. 24(11):2125-32.\par \par Caporale DA, Rich SM, Spielman A, Telford SR, Kocher TD.\'a0 1995.\'a0\'a0Discriminating between Ixodes ticks by means of mitochondrial DNA sequences.. Mol Phylogenet Evol. 4(4):361-5.\par \par Rich SM, Caporale DA, Telford SR, Kocher TD, Hartl DL, Spielman A.\'a0 1995.\'a0\'a0Distribution of the Ixodes ricinus-like ticks of eastern North America.. Proc Natl Acad Sci U S A. 92(14):6284-8.\par \par Lovley DR, Phillips EJ, Lonergan DJ, Widman PK.\'a0 1995.\'a0\'a0Fe(III) and S0 reduction by Pelobacter carbinolicus.. Appl Environ Microbiol. 61(6):2132-8.\par \par Caccavo F, Lonergan DJ, Lovley DR, Davis M, Stolz JF, McInerney MJ.\'a0 1994.\'a0\'a0Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism.. Appl Environ Microbiol. 60(10):3752-9.\par \par Sandler SJ, Clark AJ.\'a0 1994.\'a0\'a0Mutational analysis of sequences in the recF gene of Escherichia coli K-12 that affect expression.. J Bacteriol. 176(13):4011-6.\par \par Sandler SJ, Clark AJ.\'a0 1994.\'a0\'a0RecOR suppression of recF mutant phenotypes in Escherichia coli K-12.. J Bacteriol. 176(12):3661-72.\par \par Sandler SJ.\'a0 1994.\'a0\'a0Studies on the mechanism of reduction of UV-inducible sulAp expression by recF overexpression in Escherichia coli K-12.. Mol Gen Genet. 245(6):741-9.\par \par Duran E, Komuniecki RW, Komuniecki PR, Wheelock MJ, Klingbeil MM, Ma YC, Johnson KR.\'a0 1993.\'a0\'a0Characterization of cDNA clones for the 2-methyl branched-chain enoyl-CoA reductase. An enzyme involved in branched-chain fatty acid synthesis in anaerobic mitochondria of the parasitic nematode Ascaris suum.. J Biol Chem. 268(30):22391-6.\par \par Sandler SJ, Clark AJ.\'a0 1993.\'a0\'a0Use of high and low level overexpression plasmids to test mutant alleles of the recF gene of Escherichia coli K-12 for partial activity.. Genetics. 135(3):643-54.\par \par Sandler SJ, Chackerian B, Li JT, Clark AJ.\'a0 1992.\'a0\'a0Sequence and complementation analysis of recF genes from Escherichia coli, Salmonella typhimurium, Pseudomonas putida and Bacillus subtilis: evidence for an essential phosphate binding loop.. Nucleic Acids Res. 20(4):839-45.\par \par Sandler SJ, Clark AJ.\'a0 1990.\'a0\'a0Factors affecting expression of the recF gene of Escherichia coli K-12.. Gene. 86(1):35-43.\par \par Blanar MA, Sandler SJ, Armengod ME, Ream LW, Clark AJ.\'a0 1984.\'a0\'a0Molecular analysis of the recF gene of Escherichia coli.. Proc Natl Acad Sci U S A. 81(15):4622-6.\par \par }