Publications
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Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments.. ISME J. 5(2):305-16.
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2011. Modeling and sensitivity analysis of electron capacitance for Geobacter in sedimentary environments.. J Contam Hydrol. 112(1-4):30-44.
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Constraint-based modeling analysis of the metabolism of two Pelobacter species.. BMC Syst Biol. 4:174.
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2010. Genome-scale constraint-based modeling of Geobacter metallireducens.. BMC Syst Biol. 3:15.
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2009. Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.. PLoS Comput Biol. 4(2):e36.
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2008. Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.. Microb Biotechnol. 2(2):274-86.
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2009. PriA mutations that affect PriA-PriC function during replication restart.. Mol Microbiol. 41(3):697-704.
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Compartmentalization of lipid biosynthesis in mycobacteria.. J Biol Chem. 280(22):21645-52.
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2005. Inositol lipid metabolism in mycobacteria: biosynthesis and regulatory mechanisms.. Biochim Biophys Acta. 1810(6):630-41.
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2011. Subpolar addition of new cell wall is directed by DivIVA in mycobacteria.. Proc Natl Acad Sci U S A. 111(31):E3243-51.
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2014. Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.. Appl Environ Microbiol. 72(2):1558-68.
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2006. In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling.. Nat Rev Microbiol. 9(1):39-50.
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2011. The degree of redundancy in metabolic genes is linked to mode of metabolism.. Biophys J. 94(4):1216-20.
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2008. Crystal ball. In silico biology meets in situ phenomenology.. Environ Microbiol. 7(4):478-9.
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2005. Happy together: microbial communities that hook up to swap electrons.. ISME J. 11(2):327-336.
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2017. Extracellular electron transfer: wires, capacitors, iron lungs, and more.. Geobiology. 6(3):225-31.
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2008. Cleaning up with genomics: applying molecular biology to bioremediation.. Nat Rev Microbiol. 1(1):35-44.
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2003. A hand-off mechanism for primosome assembly in replication restart.. Mol Cell. 26(6):781-93.
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2008. Geobacter sulfurreducens strain engineered for increased rates of respiration.. Metab Eng. 10(5):267-75.
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Department of Microbiology