Publications
Happy together: microbial communities that hook up to swap electrons.. ISME J. 11(2):327-336.
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2017. Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens.. PLoS Comput Biol. 10(4):e1003575.
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2014. Subpolar addition of new cell wall is directed by DivIVA in mycobacteria.. Proc Natl Acad Sci U S A. 111(31):E3243-51.
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Transcription regulation of the Saccharomyces cerevisiae PHO5 gene by the Ino2p and Ino4p basic helix-loop-helix proteins.. Mol Microbiol. 83(2):395-407.
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2012. Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model.. J Contam Hydrol. 122(1-4):96-103.
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2011. Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments.. ISME J. 5(2):305-16.
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2011. In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling.. Nat Rev Microbiol. 9(1):39-50.
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2011. Inositol lipid metabolism in mycobacteria: biosynthesis and regulatory mechanisms.. Biochim Biophys Acta. 1810(6):630-41.
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2011. Constraint-based modeling analysis of the metabolism of two Pelobacter species.. BMC Syst Biol. 4:174.
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2010. Modeling and sensitivity analysis of electron capacitance for Geobacter in sedimentary environments.. J Contam Hydrol. 112(1-4):30-44.
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2010. Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.. Microb Biotechnol. 2(2):274-86.
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2009. Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.. BMC Genomics. 10:447.
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2009. Genome-scale constraint-based modeling of Geobacter metallireducens.. BMC Syst Biol. 3:15.
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2009. Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.. PLoS Comput Biol. 4(2):e36.
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2008. The degree of redundancy in metabolic genes is linked to mode of metabolism.. Biophys J. 94(4):1216-20.
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2008. Differential requirements of two recA mutants for constitutive SOS expression in Escherichia coli K-12.. PLoS One. 3(12):e4100.
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2008. Extracellular electron transfer: wires, capacitors, iron lungs, and more.. Geobiology. 6(3):225-31.
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2008. Geobacter sulfurreducens strain engineered for increased rates of respiration.. Metab Eng. 10(5):267-75.
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2008. Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.. Biosystems. 90(2):421-41.
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2007. A hand-off mechanism for primosome assembly in replication restart.. Mol Cell. 26(6):781-93.
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2007. Multiple basic helix-loop-helix proteins regulate expression of the ENO1 gene of Saccharomyces cerevisiae.. Eukaryot Cell. 6(5):786-96.
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2007. Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.. Appl Environ Microbiol. 72(2):1558-68.
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2006.
Department of Microbiology