Publications

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2013
Nagarajan H, Sahin M, Nogales J, Latif H, Lovley DR, Ebrahim A, Zengler K.  2013.  Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii.. Microb Cell Fact. 12:118.
Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Juárez K, Cho B-K, Elkins JG, Nevin KP, Barrett CL et al..  2013.  Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.. Nat Commun. 4:1755.
M Siegrist S, Whiteside S, Jewett JC, Aditham A, Cava F, Bertozzi CR.  2013.  (D)-Amino acid chemical reporters reveal peptidoglycan dynamics of an intracellular pathogen.. ACS Chem Biol. 8(3):500-5.
Deangelis KM, Sharma D, Varney R, Simmons B, Isern NG, Markilllie LM, Nicora C, Norbeck AD, Taylor RC, Aldrich JT et al..  2013.  Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1.. Front Microbiol. 4:280.
Deangelis KM, Sharma D, Varney R, Simmons B, Isern NG, Markilllie LM, Nicora C, Norbeck AD, Taylor RC, Aldrich JT et al..  2013.  Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1.. Front Microbiol. 4:280.
Lizik W, Im J, Semrau JD, Barcelona MJ.  2013.  A field trial of nutrient stimulation of methanotrophs to reduce greenhouse gas emissions from landfill cover soils.. J Air Waste Manag Assoc. 63(3):300-9.
Deangelis KM, D'haeseleer P, Chivian D, Simmons B, Arkin AP, Mavromatis K, Malfatti S, Tringe S, Hazen TC.  2013.  Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.. Stand Genomic Sci. 7(3):382-98.
Holmes DE, Giloteaux L, Barlett M, Chavan MA, Smith JA, Williams KH, Wilkins M, Long P, Lovley DR.  2013.  Molecular analysis of the in situ growth rates of subsurface Geobacter species.. Appl Environ Microbiol. 79(5):1646-53.
Lee J-E, Kim I-H, Jung J-H, Seo D-H, Kang S-G, Holden JF, Cha J, Park C-S.  2013.  Molecular cloning and enzymatic characterization of cyclomaltodextrinase from hyperthermophilic archaeon Thermococcus sp. CL1.. J Microbiol Biotechnol. 23(8):1060-9.
Hatzios SK, Baer CE, Rustad TR, M Siegrist S, Pang JM, Ortega C, Alber T, Grundner C, Sherman DR, Bertozzi CR.  2013.  Osmosensory signaling in Mycobacterium tuberculosis mediated by a eukaryotic-like Ser/Thr protein kinase.. Proc Natl Acad Sci U S A. 110(52):E5069-77.
Hatzios SK, Baer CE, Rustad TR, M Siegrist S, Pang JM, Ortega C, Alber T, Grundner C, Sherman DR, Bertozzi CR.  2013.  Osmosensory signaling in Mycobacterium tuberculosis mediated by a eukaryotic-like Ser/Thr protein kinase.. Proc Natl Acad Sci U S A. 110(52):E5069-77.
Smith JA, Lovley DR, Tremblay P-L.  2013.  Outer cell surface components essential for Fe(III) oxide reduction by Geobacter metallireducens.. Appl Environ Microbiol. 79(3):901-7.
Shrestha PMalla, Rotaru A-E, Aklujkar M, Liu F, Shrestha M, Summers ZM, Malvankar N, Flores DCarlo, Lovley DR.  2013.  Syntrophic growth with direct interspecies electron transfer as the primary mechanism for energy exchange.. Environ Microbiol Rep. 5(6):904-10.
Shrestha PMalla, Rotaru A-E, Aklujkar M, Liu F, Shrestha M, Summers ZM, Malvankar N, Flores DCarlo, Lovley DR.  2013.  Syntrophic growth with direct interspecies electron transfer as the primary mechanism for energy exchange.. Environ Microbiol Rep. 5(6):904-10.
Shrestha PMalla, Rotaru A-E, Aklujkar M, Liu F, Shrestha M, Summers ZM, Malvankar N, Flores DCarlo, Lovley DR.  2013.  Syntrophic growth with direct interspecies electron transfer as the primary mechanism for energy exchange.. Environ Microbiol Rep. 5(6):904-10.
Shetty A, Swaminathan A, Lopes JM.  2013.  Transcription regulation of a yeast gene from a downstream location.. J Mol Biol. 425(3):457-65.
Shetty A, Swaminathan A, Lopes JM.  2013.  Transcription regulation of a yeast gene from a downstream location.. J Mol Biol. 425(3):457-65.
Shrestha PMalla, Rotaru A-E, Summers ZM, Shrestha M, Liu F, Lovley DR.  2013.  Transcriptomic and genetic analysis of direct interspecies electron transfer.. Appl Environ Microbiol. 79(7):2397-404.
Shrestha PMalla, Rotaru A-E, Summers ZM, Shrestha M, Liu F, Lovley DR.  2013.  Transcriptomic and genetic analysis of direct interspecies electron transfer.. Appl Environ Microbiol. 79(7):2397-404.
Shrestha PMalla, Rotaru A-E, Summers ZM, Shrestha M, Liu F, Lovley DR.  2013.  Transcriptomic and genetic analysis of direct interspecies electron transfer.. Appl Environ Microbiol. 79(7):2397-404.
Shrestha PMalla, Nevin KP, Shrestha M, Lovley DR.  2013.  When is a microbial culture "pure"? Persistent cryptic contaminant escapes detection even with deep genome sequencing. mBio. 4(2):e00591-12.
Shrestha PMalla, Nevin KP, Shrestha M, Lovley DR.  2013.  When is a microbial culture "pure"? Persistent cryptic contaminant escapes detection even with deep genome sequencing. mBio. 4(2):e00591-12.

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