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2011

Mackelprang R, Waldrop MP, Deangelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK. 2011. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.. Nature. 480(7377):368-71.

Deangelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME et al.. 2011. PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.. Appl Environ Microbiol. 77(18):6313-22.

Deangelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME et al.. 2011. PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.. Appl Environ Microbiol. 77(18):6313-22.

Prilusky J, Hodis E, Canner D, Decatur WA, Oberholser K, Martz E, Berchanski A, Harel M, Sussman JL. 2011. Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.. J Struct Biol. 175(2):244-52.

2012

Deangelis KM, Fortney JL, Borglin S, Silver WL, Simmons BA, Hazen TC. 2012. Anaerobic decomposition of switchgrass by tropical soil-derived feedstock-adapted consortia.. MBio. 3(1)

Borglin S, Joyner D, Deangelis KM, Khudyakov J, D'haeseleer P, Joachimiak MP, Hazen T. 2012. Application of phenotypic microarrays to environmental microbiology.. Curr Opin Biotechnol. 23(1):41-8.

Borglin S, Joyner D, Deangelis KM, Khudyakov J, D'haeseleer P, Joachimiak MP, Hazen T. 2012. Application of phenotypic microarrays to environmental microbiology.. Curr Opin Biotechnol. 23(1):41-8.

Neveu G, Cassonnet P, Vidalain P-O, Rolloy C, Mendoza J, Jones L, Tangy F, Muller M, Demeret C, Tafforeau L et al.. 2012. Comparative analysis of virus–host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. Methods. 58:349–359.

Neveu G, Cassonnet P, Vidalain P-O, Rolloy C, Mendoza J, Jones L, Tangy F, Muller M, Demeret C, Tafforeau L et al.. 2012. Comparative analysis of virus–host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. Methods. 58:349–359.

Blanco M B, Elfawal MA, Durden LA, Beati L, Xu G, Godfrey LR, Rich SM. 2012. Genetic diversity of ixodid ticks parasitizing eastern mouse and dwarf lemurs in Madagascar, with descriptions of the larva, nymph and male of Ixodes lemuris (Acari: Ixodidae).. J Parasitol.

Aklujkar M, Haveman SA, DiDonato R, Chertkov O, Han CS, Land ML, Brown P, Lovley DR. 2012. The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.. BMC Genomics. 13:690.

Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP. 2012. Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus.. Proc Natl Acad Sci U S A. 109(32):E2173-82.

Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP. 2012. Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus.. Proc Natl Acad Sci U S A. 109(32):E2173-82.

Muller M, Demeret C. 2012. The {HPV} E2-Host Protein-Protein Interactions: A Complex Hijacking of the Cellular Network. The Open Virology Journal. 6:173–189.

Muller M, Jacob Y, Jones L, Weiss A, Brino L, Chantier T, Lotteau V, Favre M, Demeret C. 2012. Large Scale Genotype Comparison of Human Papillomavirus E2-Host Interaction Networks Provides New Insights for E2 Molecular Functions. {PLoS} Pathogens. 8:e1002761.

Liang Y, Van Nostrand JD, N'guessan LA, Peacock AD, Deng Y, Long PE, Resch TC, Wu L, He Z, Li G et al.. 2012. Microbial functional gene diversity with a shift of subsurface redox conditions during In Situ uranium reduction.. Appl Environ Microbiol. 78(8):2966-72.

Li Y, Kumar KN, Dabkowski JM, Corrigan M, Scott RW, Nüsslein K, Tew GN. 2012. New bactericidal surgical suture coating.. Langmuir. 28(33):12134-9.

Deangelis KM, Firestone MK. 2012. Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes.. Appl Environ Microbiol. 78(7):2459-61.

Tremblay P-L, Zhang T, Dar SA, Leang C, Lovley DR. 2012. The Rnf complex of Clostridium ljungdahlii is a proton-translocating ferredoxin:NAD+ oxidoreductase essential for autotrophic growth.. mBio. 4(1):e00406-12.

2013

DeAngelis KM, Chivian D, Fortney J, Simmons BA, Hazen TC, Silver WL. 2013. Changes in microbial dynamics during long-term decomposition in tropical forests.. Soil Biology and Biochemistry. 66:60-68.

Muller M, Cassonnet P, Favre M, Jacob Y, Demeret C. 2013. A Comparative Approach to Characterize the Landscape of Host-Pathogen Protein-Protein Interactions. Journal of Visualized Experiments.

Deangelis KM, Sharma D, Varney R, Simmons B, Isern NG, Markilllie LM, Nicora C, Norbeck AD, Taylor RC, Aldrich JT et al.. 2013. Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1.. Front Microbiol. 4:280.

Williams KH, Wilkins MJ, A N'Guessan L, Arey B, Dodova E, Dohnalkova A, Holmes D, Lovley DR, Long PE. 2013. Field evidence of selenium bioreduction in a uranium-contaminated aquifer.. Environ Microbiol Rep. 5(3):444-52.

Williams KH, Wilkins MJ, A N'Guessan L, Arey B, Dodova E, Dohnalkova A, Holmes D, Lovley DR, Long PE. 2013. Field evidence of selenium bioreduction in a uranium-contaminated aquifer.. Environ Microbiol Rep. 5(3):444-52.

Deangelis KM, D'haeseleer P, Chivian D, Simmons B, Arkin AP, Mavromatis K, Malfatti S, Tringe S, Hazen TC. 2013. Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.. Stand Genomic Sci. 7(3):382-98.

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