Publications

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Zhuang K, Ma E, Lovley DR, Mahadevan R. 2012. The design of long-term effective uranium bioremediation strategy using a community metabolic model.. Biotechnol Bioeng. 109(10):2475-83.

Zhuang K, Izallalen M, Mouser P, Richter H, Risso C, Mahadevan R, Lovley DR. 2011. Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments.. ISME J. 5(2):305-16.

Zhao J, Fang Y, Scheibe TD, Lovley DR, Mahadevan R. 2010. Modeling and sensitivity analysis of electron capacitance for Geobacter in sedimentary environments.. J Contam Hydrol. 112(1-4):30-44.

Zhang S, Yasuo T, Lenz RW, Goodwin S. 2000. Kinetic and mechanistic characterization of the polyhydroxybutyrate synthase from Ralstonia eutropha.. Biomacromolecules. 1(2):244-51.

Zhang T, Gannon SM, Nevin KP, Franks AE, Lovley DR. 2010. Stimulating the anaerobic degradation of aromatic hydrocarbons in contaminated sediments by providing an electrode as the electron acceptor.. Environ Microbiol. 12(4):1011-20.

Zhang S, Kolvek S, Lenz RW, Goodwin S. 2003. Mechanism of the polymerization reaction initiated and catalyzed by the polyhydroxybutyrate synthase of Ralstonia eutropha.. Biomacromolecules. 4(3):504-9.

Zhang S, Kamachi M, Takagi Y, Lenz RW, Goodwin S. 2001. Comparative study of the relationship between monomer structure and reactivity for two polyhydroxyalkanoate synthases.. Appl Microbiol Biotechnol. 56(1-2):131-6.

Zhang S, Kolvek S, Goodwin S, Lenz RW. 2004. Poly(hydroxyalkanoic acid) Biosynthesis in Ectothiorhodospirashaposhnikovii: Characterization and Reactivity of a Type III PHA Synthase.. Biomacromolecules. 5(1):40-8.

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Yun J, Ueki T, Miletto M, Lovley DR. 2011. Monitoring the metabolic status of geobacter species in contaminated groundwater by quantifying key metabolic proteins with Geobacter-specific antibodies.. Appl Environ Microbiol. 77(13):4597-602.

Yoon S, Im J, Bandow N, Dispirito AA, Semrau JD. 2011. Constitutive expression of pMMO by Methylocystis strain SB2 when grown on multi-carbon substrates: implications for biodegradation of chlorinated ethenes.. Environ Microbiol Rep. 3(2):182-8.

Yi H, Nevin KP, Kim B-C, Franks AE, Klimes A, Tender LM, Lovley DR. 2009. Selection of a variant of Geobacter sulfurreducens with enhanced capacity for current production in microbial fuel cells.. Biosens Bioelectron. 24(12):3498-503.

Yennaco LJ, Hu Y, Holden JF. 2007. Characterization of malate dehydrogenase from the hyperthermophilic archaeon Pyrobaculum islandicum.. Extremophiles. 11(5):741-6.

Yang T H, Coppi MV, Lovley DR, Sun J. 2010. Metabolic response of Geobacter sulfurreducens towards electron donor/acceptor variation.. Microb Cell Fact. 9:90.

Yan B, Núñez C, Ueki T, Esteve-Núñez A, Puljic M, Adkins RM, Methé BA, Lovley DR, Krushkal J. 2006. Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.

Yan B, Lovley DR, Krushkal J. 2007. Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.. Biosystems. 90(2):421-41.

Yan B, Methé BA, Lovley DR, Krushkal J. 2004. Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family Geobacteraceae.. J Theor Biol. 230(1):133-44.

Yan J, Im J, Yang Y, Löffler FE. 2013. Guided cobalamin biosynthesis supports Dehalococcoides mccartyi reductive dechlorination activity.. Philos Trans R Soc Lond B Biol Sci. 368(1616):20120320.

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Wood TI, Griffith KL, Fawcett WP, Jair KW, Schneider TD, Wolf RE. 1999. Interdependence of the position and orientation of SoxS binding sites in the transcriptional activation of the class I subset of Escherichia coli superoxide-inducible promoters.. Mol Microbiol. 34(3):414-30.

Williams KH, Nevin KP, Franks A, Englert A, Long PE, Lovley DR. 2010. Electrode-based approach for monitoring in situ microbial activity during subsurface bioremediation.. Environ Sci Technol. 44(1):47-54.

Wilkins MJ, Callister SJ, Miletto M, Williams KH, Nicora CD, Lovley DR, Long PE, Lipton MS. 2011. Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI).. Microb Biotechnol. 4(1):55-63.

Wilkins MJ, VerBerkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan LA, Thomas BC, Nicora CD, Shah MB et al.. 2009. Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.. Appl Environ Microbiol. 75(20):6591-9.

Wiesmann UN, DiDonato S, Herschkowitz NN. 1975. Effect of chloroquine on cultured fibroblasts: release of lysosomal hydrolases and inhibition of their uptake.. Biochem Biophys Res Commun. 66(4):1338-43.

Widmer G, Akiyoshi D, Buckholt MA, Feng X, Rich SM, Deary KM, Bowman CA, Xu P, Wang Y, Wang X et al.. 2000. Animal propagation and genomic survey of a genotype 1 isolate of Cryptosporidium parvum.. Mol Biochem Parasitol. 108(2):187-97.

Welch A, Drummond F, Tewari S, Averill A, Burand JP. 2009. Presence and prevalence of viruses in local and migratory honeybees (Apis mellifera) in Massachusetts.. Appl Environ Microbiol. 75(24):7862-5.

Weitzman PD, Danson MJ. 1976. Citrate synthase.. Curr Top Cell Regul. 10:161-204.

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