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Deangelis KM, Silver WL, Thompson AW, Firestone MK.  2010.  Microbial communities acclimate to recurring changes in soil redox potential status.. Environ Microbiol. 12(12):3137-49.
Deangelis KM, Sharma D, Varney R, Simmons B, Isern NG, Markilllie LM, Nicora C, Norbeck AD, Taylor RC, Aldrich JT et al..  2013.  Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1.. Front Microbiol. 4:280.
Deangelis KM, D'haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport K W, Goodwin L et al..  2011.  Complete genome sequence of "Enterobacter lignolyticus" SCF1.. Stand Genomic Sci. 5(1):69-85.
Deangelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC.  2011.  Characterization of trapped lignin-degrading microbes in tropical forest soil.. PLoS One. 6(4):e19306.
Diao Y, Rodriguez V, Klingbeil M, Arsuaga J.  2015.  Orientation of DNA Minicircles Balances Density and Topological Complexity in Kinetoplast DNA.. PLoS One. 10(6):e0130998.
DiDonato LN, Sullivan SA, Methé BA, Nevin KP, England R, Lovley DR.  2006.  Role of RelGsu in stress response and Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 188(24):8469-78.
Ding Y-HR, Hixson KK, Aklujkar MA, Lipton MS, Smith RD, Lovley DR, Mester T.  2008.  Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor.. Biochim Biophys Acta. 1784(12):1935-41.
Ding Y-HR, Hixson KK, Giometti CS, Stanley A, Esteve-Núñez A, Khare T, Tollaksen SL, Zhu W, Adkins JN, Lipton MS et al..  2006.  The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions.. Biochim Biophys Acta. 1764(7):1198-206.
Duran E, Komuniecki RW, Komuniecki PR, Wheelock MJ, Klingbeil MM, Ma YC, Johnson KR.  1993.  Characterization of cDNA clones for the 2-methyl branched-chain enoyl-CoA reductase. An enzyme involved in branched-chain fatty acid synthesis in anaerobic mitochondria of the parasitic nematode Ascaris suum.. J Biol Chem. 268(30):22391-6.
Duval B, Goodwin S.  2000.  Methane production and release from two New England peatlands.. Int Microbiol. 3(2):89-95.
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Elifantz H, N'guessan LA, Mouser PJ, Williams KH, Wilkins MJ, Risso C, Holmes DE, Long PE, Lovley DR.  2010.  Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations.. FEMS Microbiol Ecol. 73(3):441-9.
Elkhaimi M, Kaadige MR, Kamath D, Jackson JC, Biliran H, Lopes JM.  2000.  Combinatorial regulation of phospholipid biosynthetic gene expression by the UME6, SIN3 and RPD3 genes.. Nucleic Acids Res. 28(16):3160-7.
Esteve-Núñez A, Núñez C, Lovley DR.  2004.  Preferential reduction of FeIII over fumarate by Geobacter sulfurreducens.. J Bacteriol. 186(9):2897-9.
Esteve-Núñez A, Sosnik J, Visconti P, Lovley DR.  2008.  Fluorescent properties of c-type cytochromes reveal their potential role as an extracytoplasmic electron sink in Geobacter sulfurreducens.. Environ Microbiol. 10(2):497-505.
F
Fang Y, Scheibe TD, Mahadevan R, Garg S, Long PE, Lovley DR.  2011.  Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model.. J Contam Hydrol. 122(1-4):96-103.
Fang B, Jiang Y, Rotello VM, Nüsslein K, Santore MM.  2014.  Easy come easy go: surfaces containing immobilized nanoparticles or isolated polycation chains facilitate removal of captured Staphylococcus aureus by retarding bacterial bond maturation.. ACS Nano. 8(2):1180-90.
Fang B, Jiang Y, Nüsslein K, Rotello VM, Santore MM.  2015.  Antimicrobial surfaces containing cationic nanoparticles: how immobilized, clustered, and protruding cationic charge presentation affects killing activity and kinetics.. Colloids Surf B Biointerfaces. 125:255-63.
Fang B, Gon S, Park M-H, Kumar K-N, Rotello VM, Nüsslein K, Santore MM.  2012.  Using flow to switch the valency of bacterial capture on engineered surfaces containing immobilized nanoparticles.. Langmuir. 28(20):7803-10.
Fang B, Gon S, Park M, Kumar K-N, Rotello VM, Nusslein K, Santore MM.  2011.  Bacterial adhesion on hybrid cationic nanoparticle-polymer brush surfaces: ionic strength tunes capture from monovalent to multivalent binding.. Colloids Surf B Biointerfaces. 87(1):109-15.
Feinberg LF, Srikanth R, Vachet RW, Holden JF.  2008.  Constraints on anaerobic respiration in the hyperthermophilic Archaea Pyrobaculum islandicum and Pyrobaculum aerophilum.. Appl Environ Microbiol. 74(2):396-402.
Feinberg LF, Holden JF.  2006.  Characterization of dissimilatory Fe(III) versus NO3- reduction in the hyperthermophilic archaeon Pyrobaculum aerophilum.. J Bacteriol. 188(2):525-31.
Feist AM, Nagarajan H, Rotaru A-E, Tremblay P-L, Zhang T, Nevin KP, Lovley DR, Zengler K.  2014.  Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens.. PLoS Comput Biol. 10(4):e1003575.
Feng X, Rich SM, Akiyoshi D, Tumwine JK, Kekitiinwa A, Nabukeera N, Tzipori S, Widmer G.  2000.  Extensive polymorphism in Cryptosporidium parvum identified by multilocus microsatellite analysis.. Appl Environ Microbiol. 66(8):3344-9.
Feng X, Rich SM, Tzipori S, Widmer G.  2002.  Experimental evidence for genetic recombination in the opportunistic pathogen Cryptosporidium parvum.. Mol Biochem Parasitol. 119(1):55-62.
Ferreira MU, Ribeiro WL, Tonon AP, Kawamoto F, Rich SM.  2003.  Sequence diversity and evolution of the malaria vaccine candidate merozoite surface protein-1 (MSP-1) of Plasmodium falciparum.. Gene. 304:65-75.

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