Publications

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2004

Ortiz-Bernad I, Anderson RT, Vrionis HA, Lovley DR. 2004. Vanadium respiration by Geobacter metallireducens: novel strategy for in situ removal of vanadium from groundwater.. Appl Environ Microbiol. 70(5):3091-5.

2005

Chang Y-J, Long PE, Geyer R, Peacock AD, Resch CT, Sublette K, Pfiffner S, Smithgall A, Anderson RT, Vrionis HA et al.. 2005. Microbial incorporation of 13C-labeled acetate at the field scale: detection of microbes responsible for reduction of U(VI).. Environ Sci Technol. 39(23):9039-48.

Vrionis HA, Anderson RT, Ortiz-Bernad I, O'Neill KR, Resch CT, Peacock AD, Dayvault R, White DC, Long PE, Lovley DR. 2005. Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site.. Appl Environ Microbiol. 71(10):6308-18.

Gregory KB, Lovley DR. 2005. Remediation and recovery of uranium from contaminated subsurface environments with electrodes.. Environ Sci Technol. 39(22):8943-7.

2007

Gibney BP, Nüsslein K. 2007. Arsenic sequestration by nitrate respiring microbial communities in urban lake sediments.. Chemosphere. 70(2):329-36.

Butler JE, He Q, Nevin KP, He Z, Zhou J, Lovley DR. 2007. Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site.. BMC Genomics. 8:180.

Shelobolina ES, Coppi MV, Korenevsky AA, DiDonato LN, Sullivan SA, Konishi H, Xu H, Leang C, Butler JE, Kim B-C et al.. 2007. Importance of c-Type cytochromes for U(VI) reduction by Geobacter sulfurreducens.. BMC Microbiol. 7:16.

Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP et al.. 2007. Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.. ISME J. 1(8):663-77.

2008

O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo JM, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'guessan LA et al.. 2008. Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.. Environ Microbiol. 10(5):1218-30.

Izallalen M, Mahadevan R, Burgard A, Postier B, DiDonato R, Sun J, Schilling CH, Lovley DR. 2008. Geobacter sulfurreducens strain engineered for increased rates of respiration.. Metab Eng. 10(5):267-75.

Risso C, Methé BA, Elifantz H, Holmes DE, Lovley DR. 2008. Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation.. Microbiology. 154(Pt 9):2589-99.

2009

Scheibe TD, Mahadevan R, Fang Y, Garg S, Long PE, Lovley DR. 2009. Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.. Microb Biotechnol. 2(2):274-86.

Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R. 2009. Genome-scale constraint-based modeling of Geobacter metallireducens.. BMC Syst Biol. 3:15.

Wilkins MJ, VerBerkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan LA, Thomas BC, Nicora CD, Shah MB et al.. 2009. Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.. Appl Environ Microbiol. 75(20):6591-9.

Mouser PJ, Holmes DE, Perpetua LA, DiDonato R, Postier B, Liu A, Lovley DR. 2009. Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation.. ISME J. 3(4):454-65.

2010

Stout L, Nüsslein K. 2010. Biotechnological potential of aquatic plant-microbe interactions.. Curr Opin Biotechnol. 21(3):339-45.

Elifantz H, N'guessan LA, Mouser PJ, Williams KH, Wilkins MJ, Risso C, Holmes DE, Long PE, Lovley DR. 2010. Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations.. FEMS Microbiol Ecol. 73(3):441-9.

Aklujkar M, Young ND, Holmes D, Chavan M, Risso C, Kiss HE, Han CS, Land ML, Lovley DR. 2010. The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.. BMC Genomics. 11:490.

Zhao J, Fang Y, Scheibe TD, Lovley DR, Mahadevan R. 2010. Modeling and sensitivity analysis of electron capacitance for Geobacter in sedimentary environments.. J Contam Hydrol. 112(1-4):30-44.

N'guessan LA, Elifantz H, Nevin KP, Mouser PJ, Methé B, Woodard TL, Manley K, Williams KH, Wilkins MJ, Larsen JT et al.. 2010. Molecular analysis of phosphate limitation in Geobacteraceae during the bioremediation of a uranium-contaminated aquifer.. ISME J. 4(2):253-66.

Stout LM, Dodova EN, Tyson JF, Nüsslein K. 2010. Phytoprotective influence of bacteria on growth and cadmium accumulation in the aquatic plant Lemna minor.. Water Res. 44(17):4970-9.

2011

Tremblay P-L, Summers ZM, Glaven RH, Nevin KP, Zengler K, Barrett CL, Qiu Y, Palsson BO, Lovley DR. 2011. A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.. Environ Microbiol. 13(1):13-23.

Wilkins MJ, Callister SJ, Miletto M, Williams KH, Nicora CD, Lovley DR, Long PE, Lipton MS. 2011. Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI).. Microb Biotechnol. 4(1):55-63.

Fang Y, Scheibe TD, Mahadevan R, Garg S, Long PE, Lovley DR. 2011. Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model.. J Contam Hydrol. 122(1-4):96-103.

Zhuang K, Izallalen M, Mouser P, Richter H, Risso C, Mahadevan R, Lovley DR. 2011. Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments.. ISME J. 5(2):305-16.

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