Publications

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2021
Zhou J, Holmes DE, Tang H-Y, Lovley DR.  2021.  Correlation of Key Physiological Properties of Isolates with Environment of Origin.. Appl Environ Microbiol. 87(13):e0073121.
2014
Paula FS, Rodrigues JLM, Zhou J, Wu L, Mueller RC, Mirza BS, Bohannan BJM, Nüsslein K, Deng Y, Tiedje JM et al..  2014.  Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities.. Mol Ecol. 23(12):2988-99.
Mueller RC, Paula FS, Mirza BS, Rodrigues JLM, Nüsslein K, Bohannan BJM.  2014.  Links between plant and fungal communities across a deforestation chronosequence in the Amazon rainforest.. ISME J. 8(7):1548-50.
2013
Rodrigues JLM, Pellizari VH, Mueller R, Baek K, Jesus Eda C, Paula FS, Mirza B, Hamaoui GS, Tsai SMui, Feigl B et al..  2013.  Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities.. Proc Natl Acad Sci U S A. 110(3):988-93.
2012
Ver Eecke HC, Butterfield DA, Huber JA, Lilley MD, Olson EJ, Roe KK, Evans LJ, Merkel AY, Cantin HV, Holden JF.  2012.  Hydrogen-limited growth of hyperthermophilic methanogens at deep-sea hydrothermal vents.. Proc Natl Acad Sci U S A. 109(34):13674-9.
Deangelis KM, Firestone MK.  2012.  Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes.. Appl Environ Microbiol. 78(7):2459-61.
2011
Deangelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC.  2011.  Characterization of trapped lignin-degrading microbes in tropical forest soil.. PLoS One. 6(4):e19306.
2009
Junglen S, Kurth A, Kuehl H, Quan P-L, Ellerbrok H, Pauli G, Nitsche A, Nunn C, Rich SM, Lipkin WI et al..  2009.  Examining landscape factors influencing relative distribution of mosquito genera and frequency of virus infection.. Ecohealth. 6(2):239-49.
Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R.  2009.  Genome-scale constraint-based modeling of Geobacter metallireducens.. BMC Syst Biol. 3:15.
2007
Gomez-Alvarez V, King GM, Nüsslein K.  2007.  Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages.. FEMS Microbiol Ecol. 60(1):60-73.
Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP et al..  2007.  Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.. ISME J. 1(8):663-77.
2003
Tor JM, Amend JP, Lovley DR.  2003.  Metabolism of organic compounds in anaerobic, hydrothermal sulphate-reducing marine sediments.. Environ Microbiol. 5(7):583-91.
Anderson RT, Vrionis HA, Ortiz-Bernad I, Resch CT, Long PE, Dayvault R, Karp K, Marutzky S, Metzler DR, Peacock A et al..  2003.  Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer.. Appl Environ Microbiol. 69(10):5884-91.
Kashefi K, Holmes DE, Baross JA, Lovley DR.  2003.  Thermophily in the Geobacteraceae: Geothermobacter ehrlichii gen. nov., sp. nov., a novel thermophilic member of the Geobacteraceae from the "Bag City" hydrothermal vent.. Appl Environ Microbiol. 69(5):2985-93.
2002
Finneran KT, Forbush HM, VanPraagh C GV, Lovley DR.  2002.  Desulfitobacterium metallireducens sp. nov., an anaerobic bacterium that couples growth to the reduction of metals and humic acids as well as chlorinated compounds.. Int J Syst Evol Microbiol. 52(Pt 6):1929-35.
Chapelle FH, O'Neill K, Bradley PM, Methé BA, Ciufo SA, Knobel LRL, Lovley DR.  2002.  A hydrogen-based subsurface microbial community dominated by methanogens.. Nature. 415(6869):312-5.
1999
Nüsslein K, Tiedje JM.  1999.  Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil.. Appl Environ Microbiol. 65(8):3622-6.
1998
Nüsslein K, Tiedje JM.  1998.  Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition.. Appl Environ Microbiol. 64(4):1283-9.
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