Publications

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Filters: Author is Methé, Barbara A and Keyword is Geobacter [Clear All Filters]

2004

Yan B, Methé BA, Lovley DR, Krushkal J. 2004. Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family Geobacteraceae.. J Theor Biol. 230(1):133-44.

2005

Methé BA, Webster J, Nevin K, Butler J, Lovley DR. 2005. DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens.. Appl Environ Microbiol. 71(5):2530-8.

2006

Yan B, Núñez C, Ueki T, Esteve-Núñez A, Puljic M, Adkins RM, Methé BA, Lovley DR, Krushkal J. 2006. Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.

Núñez C, Esteve-Núñez A, Giometti C, Tollaksen S, Khare T, Lin W, Lovley DR, Methé BA. 2006. DNA microarray and proteomic analyses of the RpoS regulon in Geobacter sulfurreducens.. J Bacteriol. 188(8):2792-800.

Holmes DE, Chaudhuri SK, Nevin KP, Mehta T, Methé BA, Liu A, Ward JE, Woodard TL, Webster J, Lovley DR. 2006. Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens.. Environ Microbiol. 8(10):1805-15.

DiDonato LN, Sullivan SA, Methé BA, Nevin KP, England R, Lovley DR. 2006. Role of RelGsu in stress response and Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 188(24):8469-78.

2007

Krushkal J, Yan B, DiDonato LN, Puljic M, Nevin KP, Woodard TL, Adkins RM, Methé BA, Lovley DR. 2007. Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a relGsu mutant.. Funct Integr Genomics. 7(3):229-55.

Coppi MV, O'Neil RA, Leang C, Kaufmann F, Methé BA, Nevin KP, Woodard TL, Liu A, Lovley DR. 2007. Involvement of Geobacter sulfurreducens SfrAB in acetate metabolism rather than intracellular, respiration-linked Fe(III) citrate reduction.. Microbiology. 153(Pt 10):3572-85.

2008

Mahadevan R, Yan B, Postier B, Nevin KP, Woodard TL, O'Neil R, Coppi MV, Methé BA, Krushkal J. 2008. Characterizing regulation of metabolism in Geobacter sulfurreducens through genome-wide expression data and sequence analysis.. OMICS. 12(1):33-59.

Risso C, Methé BA, Elifantz H, Holmes DE, Lovley DR. 2008. Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation.. Microbiology. 154(Pt 9):2589-99.

2009

Nevin KP, Kim B-C, Glaven RH, Johnson JP, Woodard TL, Methé BA, Didonato RJ, Covalla SF, Franks AE, Liu A et al.. 2009. Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells.. PLoS One. 4(5):e5628.

Juárez K, Kim B-C, Nevin K, Olvera L, Reguera G, Lovley DR, Methé BA. 2009. PilR, a transcriptional regulator for pilin and other genes required for Fe(III) reduction in Geobacter sulfurreducens.. J Mol Microbiol Biotechnol. 16(3-4):146-58.

2010

Nagarajan H, Butler JE, Klimes A, Qiu Y, Zengler K, Ward J, Young ND, Methé BA, Palsson BØ, Lovley DR et al.. 2010. De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads.. PLoS One. 5(6):e10922.