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Ueki T, Woodard TL, Lovley DR.\'a0 2022.\'a0\'a0Genetic Manipulation of Desulfovibrio ferrophilus and Evaluation of Fe(III) Oxide Reduction Mechanisms.. Microbiol Spectr. 10(6):e0392222.\par \par Ueki T, Walker DJF, Nevin KP, Ward JE, Woodard TL, Nonnenmann SS, Lovley DR.\'a0 2021.\'a0\'a0Generation of High Current Densities in Geobacter sulfurreducens Lacking the Putative Gene for the PilB Pilus Assembly Motor.. Microbiol Spectr. 9(2):e0087721.\par \par Ueki T, Nevin KP, Woodard TL, Lovley DR.\'a0 2016.\'a0\'a0Genetic switches and related tools for controlling gene expression and electrical outputs of Geobacter sulfurreducens.. J Ind Microbiol Biotechnol. 43(11):1561-1575.\par \par Liu X, Tremblay P-L, Malvankar NS, Nevin KP, Lovley DR, Vargas M.\'a0 2014.\'a0\'a0A Geobacter sulfurreducens strain expressing pseudomonas aeruginosa type IV pili localizes OmcS on pili but is deficient in Fe(III) oxide reduction and current production.. Appl Environ Microbiol. 80(3):1219-24.\par \par Smith JA, Tremblay P-L, Shrestha PMalla, Snoeyenbos-West OL, Franks AE, Nevin KP, Lovley DR.\'a0 2014.\'a0\'a0Going wireless: Fe(III) oxide reduction without pili by Geobacter sulfurreducens strain JS-1.. Appl Environ Microbiol. 80(14):4331-40.\par \par Leang C, Ueki T, Nevin KP, Lovley DR.\'a0 2013.\'a0\'a0A genetic system for Clostridium ljungdahlii: a chassis for autotrophic production of biocommodities and a model homoacetogen.. Appl Environ Microbiol. 79(4):1102-9.\par \par Ver Eecke HC, Akerman NH, Huber JA, Butterfield DA, Holden JF.\'a0 2013.\'a0\'a0Growth kinetics and energetics of a deep-sea hyperthermophilic methanogen under varying environmental conditions.. Environ Microbiol Rep. 5(5):665-71.\par \par Yan J, Im J, Yang Y, L\'f6ffler FE.\'a0 2013.\'a0\'a0Guided cobalamin biosynthesis supports Dehalococcoides mccartyi reductive dechlorination activity.. Philos Trans R Soc Lond B Biol Sci. 368(1616):20120320.\par \par Blanco M B, Elfawal MA, Durden LA, Beati L, Xu G, Godfrey LR, Rich SM.\'a0 2012.\'a0\'a0Genetic diversity of ixodid ticks parasitizing eastern mouse and dwarf lemurs in Madagascar, with descriptions of the larva, nymph and male of Ixodes lemuris (Acari: Ixodidae).. J Parasitol. \par \par Aklujkar M, Haveman SA, DiDonato R, Chertkov O, Han CS, Land ML, Brown P, Lovley DR.\'a0 2012.\'a0\'a0The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.. BMC Genomics. 13:690.\par \par Holmes DE, Risso C, Smith JA, Lovley DR.\'a0 2012.\'a0\'a0Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus.. ISME J. 6(1):146-57.\par \par Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP.\'a0 2012.\'a0\'a0Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus.. Proc Natl Acad Sci U S A. 109(32):E2173-82.\par \par Strycharz SM, Glaven RH, Coppi MV, Gannon SM, Perpetua LA, Liu A, Nevin KP, Lovley DR.\'a0 2011.\'a0\'a0Gene expression and deletion analysis of mechanisms for electron transfer from electrodes to Geobacter sulfurreducens.. Bioelectrochemistry. 80(2):142-50.\par \par Krushkal J, Sontineni S, Leang C, Qu Y, Adkins RM, Lovley DR.\'a0 2011.\'a0\'a0Genome diversity of the TetR family of transcriptional regulators in a metal-reducing bacterial family Geobacteraceae and other microbial species.. OMICS. 15(7-8):495-506.\par \par Zhuang K, Izallalen M, Mouser P, Richter H, Risso C, Mahadevan R, Lovley DR.\'a0 2011.\'a0\'a0Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments.. ISME J. 5(2):305-16.\par \par Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru A-E et al..\'a0 2011.\'a0\'a0Geobacter: the microbe electric's physiology, ecology, and practical applications.. Adv Microb Physiol. 59:1-100.\par \par Aklujkar M, Young ND, Holmes D, Chavan M, Risso C, Kiss HE, Han CS, Land ML, Lovley DR.\'a0 2010.\'a0\'a0The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.. BMC Genomics. 11:490.\par \par Ueki T, Lovley DR.\'a0 2010.\'a0\'a0Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species.. Nucleic Acids Res. 38(3):810-21.\par \par Krushkal J, Ju\'e1rez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T.\'a0 2010.\'a0\'a0Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.. Gene. 469(1-2):31-44.\par \par Aklujkar M, Krushkal J, DiBartolo G, Lapidus A, Land ML, Lovley DR.\'a0 2009.\'a0\'a0The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.. BMC Microbiol. 9:109.\par \par Risso C, Sun J, Zhuang K, Mahadevan R, DeBoy R, Ismail W, Shrivastava S, Huot H, Kothari S, Daugherty S et al..\'a0 2009.\'a0\'a0Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.. BMC Genomics. 10:447.\par \par Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R.\'a0 2009.\'a0\'a0Genome-scale constraint-based modeling of Geobacter metallireducens.. BMC Syst Biol. 3:15.\par \par Leang C, Krushkal J, Ueki T, Puljic M, Sun J, Ju\'e1rez K, N\'fa\'f1ez C, Reguera G, DiDonato R, Postier B et al..\'a0 2009.\'a0\'a0Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens.. BMC Genomics. 10:331.\par \par Qu Y, Brown P, Barbe JF, Puljic M, Merino E, Adkins RM, Lovley DR, Krushkal J.\'a0 2009.\'a0\'a0GSEL version 2, an online genome-wide query system of operon organization and regulatory sequence elements of Geobacter sulfurreducens.. OMICS. 13(5):439-49.\par \par O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo JM, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'guessan LA et al..\'a0 2008.\'a0\'a0Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.. Environ Microbiol. 10(5):1218-30.\par \par Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo JM, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR.\'a0 2008.\'a0\'a0Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.. Microbiology. 154(Pt 5):1422-35.\par \par Haveman SA, Didonato RJ, Villanueva L, Shelobolina ES, Postier BL, Xu B, Liu A, Lovley DR.\'a0 2008.\'a0\'a0Genome-wide gene expression patterns and growth requirements suggest that Pelobacter carbinolicus reduces Fe(III) indirectly via sulfide production.. Appl Environ Microbiol. 74(14):4277-84.\par \par Izallalen M, Mahadevan R, Burgard A, Postier B, DiDonato R, Sun J, Schilling CH, Lovley DR.\'a0 2008.\'a0\'a0Geobacter sulfurreducens strain engineered for increased rates of respiration.. Metab Eng. 10(5):267-75.\par \par Shelobolina ES, Vrionis HA, Findlay RH, Lovley DR.\'a0 2008.\'a0\'a0Geobacter uraniireducens sp. nov., isolated from subsurface sediment undergoing uranium bioremediation.. Int J Syst Evol Microbiol. 58(Pt 5):1075-8.\par \par Strycharz SM, Woodard TL, Johnson JP, Nevin KP, Sanford RA, L\'f6ffler FE, Lovley DR.\'a0 2008.\'a0\'a0Graphite electrode as a sole electron donor for reductive dechlorination of tetrachlorethene by Geobacter lovleyi.. Appl Environ Microbiol. 74(19):5943-7.\par \par Kashefi K, Shelobolina ES, Elliott CW, Lovley DR.\'a0 2008.\'a0\'a0Growth of thermophilic and hyperthermophilic Fe(III)-reducing microorganisms on a ferruginous smectite as the sole electron acceptor.. Appl Environ Microbiol. 74(1):251-8.\par \par Lanthier M, Gregory KB, Lovley DR.\'a0 2008.\'a0\'a0Growth with high planktonic biomass in Shewanella oneidensis fuel cells.. FEMS Microbiol Lett. 278(1):29-35.\par \par Krushkal J, Yan B, DiDonato LN, Puljic M, Nevin KP, Woodard TL, Adkins RM, Meth\'e9 BA, Lovley DR.\'a0 2007.\'a0\'a0Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a relGsu mutant.. Funct Integr Genomics. 7(3):229-55.\par \par Yan B, Lovley DR, Krushkal J.\'a0 2007.\'a0\'a0Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.. Biosystems. 90(2):421-41.\par \par Butler JE, He Q, Nevin KP, He Z, Zhou J, Lovley DR.\'a0 2007.\'a0\'a0Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site.. BMC Genomics. 8:180.\par \par Shelobolina ES, Nevin KP, Blakeney-Hayward JD, Johnsen CV, Plaia TW, Krader P, Woodard T, Holmes DE, Vanpraagh C G, Lovley DR.\'a0 2007.\'a0\'a0Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.. Int J Syst Evol Microbiol. 57(Pt 1):126-35.\par \par Butler JE, Glaven RH, Esteve-N\'fa\'f1ez A, N\'fa\'f1ez C, Shelobolina ES, Bond DR, Lovley DR.\'a0 2006.\'a0\'a0Genetic characterization of a single bifunctional enzyme for fumarate reduction and succinate oxidation in Geobacter sulfurreducens and engineering of fumarate reduction in Geobacter metallireducens.. J Bacteriol. 188(2):450-5.\par \par Hancock LC, Behta RP, Lopes JM.\'a0 2006.\'a0\'a0Genomic analysis of the Opi- phenotype.. Genetics. 173(2):621-34.\par \par Gardocki ME, Bakewell M, Kamath D, Robinson K, Borovicka K, Lopes JM.\'a0 2005.\'a0\'a0Genomic analysis of PIS1 gene expression.. Eukaryot Cell. 4(3):604-14.\par \par Nevin KP, Holmes DE, Woodard TL, Hinlein ES, Ostendorf DW, Lovley DR.\'a0 2005.\'a0\'a0Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates.. Int J Syst Evol Microbiol. 55(Pt 4):1667-74.\par \par Griffith KL, Wolf RE.\'a0 2004.\'a0\'a0Genetic evidence for pre-recruitment as the mechanism of transcription activation by SoxS of Escherichia coli: the dominance of DNA binding mutations of SoxS.. J Mol Biol. 344(1):1-10.\par \par Lin WC, Coppi MV, Lovley DR.\'a0 2004.\'a0\'a0Geobacter sulfurreducens can grow with oxygen as a terminal electron acceptor.. Appl Environ Microbiol. 70(4):2525-8.\par \par Gregory KB, Bond DR, Lovley DR.\'a0 2004.\'a0\'a0Graphite electrodes as electron donors for anaerobic respiration.. Environ Microbiol. 6(6):596-604.\par \par Meth\'e9 BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ et al..\'a0 2003.\'a0\'a0Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.. Science. 302(5652):1967-9.\par \par Jara M, N\'fa\'f1ez C, Campoy S, Fern\'e1ndez de Henestrosa AR, Lovley DR, Barb\'e9 J.\'a0 2003.\'a0\'a0Geobacter sulfurreducens has two autoregulated lexA genes whose products do not bind the recA promoter: differing responses of lexA and recA to DNA damage.. J Bacteriol. 185(8):2493-502.\par \par Childers SE, Ciufo S, Lovley DR.\'a0 2002.\'a0\'a0Geobacter metallireducens accesses insoluble Fe(III) oxide by chemotaxis.. Nature. 416(6882):767-9.\par \par Kashefi K, Tor JM, Holmes DE, Gaw Van Praagh CV, Reysenbach A-L, Lovley DR.\'a0 2002.\'a0\'a0Geoglobus ahangari gen. nov., sp. nov., a novel hyperthermophilic archaeon capable of oxidizing organic acids and growing autotrophically on hydrogen with Fe(III) serving as the sole electron acceptor.. Int J Syst Evol Microbiol. 52(Pt 3):719-28.\par \par Coates JD, Bhupathiraju VK, Achenbach LA, Mclnerney MJ, Lovley DR.\'a0 2001.\'a0\'a0Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers.. Int J Syst Evol Microbiol. 51(Pt 2):581-8.\par \par Ayala FJ, Rich SM.\'a0 2000.\'a0\'a0Genetic variation and the recent worldwide expansion of Plasmodium falciparum.. Gene. 261(1):161-70.\par \par Coates JD, Ellis DJ, Gaw CV, Lovley DR.\'a0 1999.\'a0\'a0Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer.. Int J Syst Bacteriol. 49 Pt 4:1615-22.\par \par Cord-Ruwisch R, Lovley DR, Schink B.\'a0 1998.\'a0\'a0Growth of geobacter sulfurreducens with acetate in syntrophic cooperation with hydrogen-oxidizing anaerobic partners. Appl Environ Microbiol. 64(6):2232-6.\par \par Caccavo F, Coates JD, Rossello-Mora RA, Ludwig W, Schleifer KH, Lovley DR, McInerney MJ.\'a0 1996.\'a0\'a0Geovibrio ferrireducens, a phylogenetically distinct dissimilatory Fe(III)-reducing bacterium.. Arch Microbiol. 165(6):370-6.\par \par Laverman AM, Blum JS, Schaefer JK, Phillips E, Lovley DR, Oremland RS.\'a0 1995.\'a0\'a0Growth of Strain SES-3 with Arsenate and Other Diverse Electron Acceptors.. Appl Environ Microbiol. 61(10):3556-61.\par \par Caccavo F, Lonergan DJ, Lovley DR, Davis M, Stolz JF, McInerney MJ.\'a0 1994.\'a0\'a0Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism.. Appl Environ Microbiol. 60(10):3752-9.\par \par Lovley DR, Giovannoni SJ, White DC, Champine JE, Phillips EJ, Gorby YA, Goodwin S.\'a0 1993.\'a0\'a0Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals.. Arch Microbiol. 159(4):336-44.\par \par Clark AJ, Sandler SJ, Willis DK, Chu CC, Blanar MA, Lovett ST.\'a0 1984.\'a0\'a0Genes of the RecE and RecF pathways of conjugational recombination in Escherichia coli.. Cold Spring Harb Symp Quant Biol. 49:453-62.\par \par }