Shetty A, Swaminathan A, Lopes JM.  2013.  Transcription regulation of a yeast gene from a downstream location.. J Mol Biol. 425(3):457-65.

He Y, Swaminathan A, Lopes JM.  2012.  Transcription regulation of the Saccharomyces cerevisiae PHO5 gene by the Ino2p and Ino4p basic helix-loop-helix proteins.. Mol Microbiol. 83(2):395-407.

Shetty A, Lopes JM.  2010.  Derepression of INO1 transcription requires cooperation between the Ino2p-Ino4p heterodimer and Cbf1p and recruitment of the ISW2 chromatin-remodeling complex.. Eukaryot Cell. 9(12):1845-55.

Chen L, Lopes JM.  2010.  Multiple bHLH proteins regulate CIT2 expression in Saccharomyces cerevisiae.. Yeast. 27(6):345-59.

Jani NM, Lopes JM.  2008.  Transcription regulation of the Saccharomyces cerevisiae PIS1 gene by inositol and the pleiotropic regulator, Ume6p.. Mol Microbiol. 70(6):1529-39.

Chen M, Lopes JM.  2007.  Multiple basic helix-loop-helix proteins regulate expression of the ENO1 gene of Saccharomyces cerevisiae.. Eukaryot Cell. 6(5):786-96.

Chen M, Hancock LC, Lopes JM.  2007.  Transcriptional regulation of yeast phospholipid biosynthetic genes.. Biochim Biophys Acta. 1771(3):310-21.

Hancock LC, Behta RP, Lopes JM.  2006.  Genomic analysis of the Opi- phenotype.. Genetics. 173(2):621-34.

Gardocki ME, Bakewell M, Kamath D, Robinson K, Borovicka K, Lopes JM.  2005.  Genomic analysis of PIS1 gene expression.. Eukaryot Cell. 4(3):604-14.

Gardocki ME, Jani N, Lopes JM.  2005.  Phosphatidylinositol biosynthesis: biochemistry and regulation.. Biochim Biophys Acta. 1735(2):89-100.

Gardenour KR, Levy J, Lopes JM.  2004.  Identification of novel dominant INO2c mutants with an Opi- phenotype.. Mol Microbiol. 52(5):1271-80.

Gardocki M E, Lopes JM.  2003.  Expression of the yeast PIS1 gene requires multiple regulatory elements including a Rox1p binding site.. J Biol Chem. 278(40):38646-52.

Kaadige MR, Lopes JM.  2003.  Opi1p, Ume6p and Sin3p control expression from the promoter of the INO2 regulatory gene via a novel regulatory cascade.. Mol Microbiol. 48(3):823-32.

Elkhaimi M, Kaadige MR, Kamath D, Jackson JC, Biliran H, Lopes JM.  2000.  Combinatorial regulation of phospholipid biosynthetic gene expression by the UME6, SIN3 and RPD3 genes.. Nucleic Acids Res. 28(16):3160-7.

Robinson KA, Koepke JI, Kharodawala M, Lopes JM.  2000.  A network of yeast basic helix-loop-helix interactions.. Nucleic Acids Res. 28(22):4460-6.

Robinson KA, Lopes JM.  2000.  The promoter of the yeast INO4 regulatory gene: a model of the simplest yeast promoter.. J Bacteriol. 182(10):2746-52.