Tremblay P-L, Summers ZM, Glaven RH, Nevin KP, Zengler K, Barrett CL, Qiu Y, Palsson BO, Lovley DR.  2011.  A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.. Environ Microbiol. 13(1):13-23.

Rich SM, Xu G.  2011.  Resolving the phylogeny of malaria parasites.. Proc Natl Acad Sci U S A. 108(32):12973-4.

Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N.  2010.  ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.. Nucleic Acids Res. 38(Web Server issue):W529-33.

Butler JE, Young ND, Lovley DR.  2010.  Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes.. BMC Genomics. 11:40.

Aklujkar M, Lovley DR.  2010.  Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus.. BMC Evol Biol. 10:230.

Chen M, Lopes JM.  2007.  Multiple basic helix-loop-helix proteins regulate expression of the ENO1 gene of Saccharomyces cerevisiae.. Eukaryot Cell. 6(5):786-96.

Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, Pupko T, Ben-Tal N.  2005.  ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.. Nucleic Acids Res. 33(Web Server issue):W299-302.

Glaser F, Pupko T, Paz I, Bell RE, Bechor-Shental D, Martz E, Ben-Tal N.  2003.  ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information.. Bioinformatics. 19(1):163-4.

Rich SM, Ayala FJ.  2003.  Progress in malaria research: the case for phylogenetics.. Adv Parasitol. 54:255-80.

Ferreira MU, Ribeiro WL, Tonon AP, Kawamoto F, Rich SM.  2003.  Sequence diversity and evolution of the malaria vaccine candidate merozoite surface protein-1 (MSP-1) of Plasmodium falciparum.. Gene. 304:65-75.

Burke WD, Malik HS, Rich SM, Eickbush TH.  2002.  Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lamblia.. Mol Biol Evol. 19(5):619-30.

Martz E.  2002.  Protein Explorer: easy yet powerful macromolecular visualization.. Trends Biochem Sci. 27(2):107-9.

Sandler SJ, Hugenholtz P, Schleper C, DeLong EF, Pace NR, Clark AJ.  1999.  Diversity of radA genes from cultured and uncultured archaea: comparative analysis of putative RadA proteins and their use as a phylogenetic marker.. J Bacteriol. 181(3):907-15.

Ayala FJ, Escalante AA, Rich SM.  1999.  Evolution of Plasmodium and the recent origin of the world populations of Plasmodium falciparum.. Parassitologia. 41(1-3):55-68.

Rich SM, Licht MC, Hudson RR, Ayala FJ.  1998.  Malaria's Eve: evidence of a recent population bottleneck throughout the world populations of Plasmodium falciparum.. Proc Natl Acad Sci U S A. 95(8):4425-30.

Brendel V, Brocchieri L, Sandler SJ, Clark AJ, Karlin S.  1997.  Evolutionary comparisons of RecA-like proteins across all major kingdoms of living organisms.. J Mol Evol. 44(5):528-41.

Boyd EF, Hill CW, Rich SM, Hartl DL.  1996.  Mosaic structure of plasmids from natural populations of Escherichia coli.. Genetics. 143(3):1091-100.