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Shrestha PMalla, Nevin KP, Shrestha M, Lovley DR.\'a0 2013.\'a0\'a0When is a microbial culture "pure"? Persistent cryptic contaminant escapes detection even with deep genome sequencing. mBio. 4(2):e00591-12.\par \par Nagarajan H, Butler JE, Klimes A, Qiu Y, Zengler K, Ward J, Young ND, Meth\'e9 BA, Palsson B\'d8, Lovley DR et al..\'a0 2010.\'a0\'a0De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads.. PLoS One. 5(6):e10922.\par \par Patel KK, Vicencio AG, Du Z, Tsirilakis K, Salva PS, Webley WC.\'a0 2010.\'a0\'a0Infectious Chlamydia pneumoniae is associated with elevated interleukin-8 and airway neutrophilia in children with refractory asthma.. Pediatr Infect Dis J. 29(12):1093-8.\par \par Lee S-W, Im J, Dispirito AA, Bodrossy L, Barcelona MJ, Semrau JD.\'a0 2009.\'a0\'a0Effect of nutrient and selective inhibitor amendments on methane oxidation, nitrous oxide production, and key gene presence and expression in landfill cover soils: characterization of the role of methanotrophs, nitrifiers, and denitrifiers.. Appl Microbiol Biotechnol. 85(2):389-403.\par \par Junglen S, Kurth A, Kuehl H, Quan P-L, Ellerbrok H, Pauli G, Nitsche A, Nunn C, Rich SM, Lipkin WI et al..\'a0 2009.\'a0\'a0Examining landscape factors influencing relative distribution of mosquito genera and frequency of virus infection.. Ecohealth. 6(2):239-49.\par \par Deangelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK.\'a0 2009.\'a0\'a0Selective progressive response of soil microbial community to wild oat roots.. ISME J. 3(2):168-78.\par \par Postier B, DiDonato R, Nevin KP, Liu A, Frank B, Lovley D, Methe BA.\'a0 2008.\'a0\'a0Benefits of in-situ synthesized microarrays for analysis of gene expression in understudied microorganisms.. J Microbiol Methods. 74(1):26-32.\par \par O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo JM, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'guessan LA et al..\'a0 2008.\'a0\'a0Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.. Environ Microbiol. 10(5):1218-30.\par \par Gomez-Alvarez V, King GM, N\'fcsslein K.\'a0 2007.\'a0\'a0Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages.. FEMS Microbiol Ecol. 60(1):60-73.\par \par Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP et al..\'a0 2007.\'a0\'a0Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.. ISME J. 1(8):663-77.\par \par Haveman SA, Holmes DE, Ding Y-HR, Ward JE, Didonato RJ, Lovley DR.\'a0 2006.\'a0\'a0c-Type cytochromes in Pelobacter carbinolicus.. Appl Environ Microbiol. 72(11):6980-5.\par \par Izquierdo JA, N\'fcsslein K.\'a0 2006.\'a0\'a0Distribution of extensive nifH gene diversity across physical soil microenvironments.. Microb Ecol. 51(4):441-52.\par \par Webley WC, Salva PS, Andrzejewski C, Cirino F, West CA, Tilahun Y, Stuart ES.\'a0 2005.\'a0\'a0The bronchial lavage of pediatric patients with asthma contains infectious Chlamydia.. Am J Respir Crit Care Med. 171(10):1083-8.\par \par Meth\'e9 BA, Webster J, Nevin K, Butler J, Lovley DR.\'a0 2005.\'a0\'a0DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens.. Appl Environ Microbiol. 71(5):2530-8.\par \par Chang Y-J, Long PE, Geyer R, Peacock AD, Resch CT, Sublette K, Pfiffner S, Smithgall A, Anderson RT, Vrionis HA et al..\'a0 2005.\'a0\'a0Microbial incorporation of 13C-labeled acetate at the field scale: detection of microbes responsible for reduction of U(VI).. Environ Sci Technol. 39(23):9039-48.\par \par Vrionis HA, Anderson RT, Ortiz-Bernad I, O'Neill KR, Resch CT, Peacock AD, Dayvault R, White DC, Long PE, Lovley DR.\'a0 2005.\'a0\'a0Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site.. Appl Environ Microbiol. 71(10):6308-18.\par \par Chin K-J, Esteve-N\'fa\'f1ez A, Leang C, Lovley DR.\'a0 2004.\'a0\'a0Direct correlation between rates of anaerobic respiration and levels of mRNA for key respiratory genes in Geobacter sulfurreducens.. Appl Environ Microbiol. 70(9):5183-9.\par \par McCool JD, Ford CC, Sandler SJ.\'a0 2004.\'a0\'a0A dnaT mutant with phenotypes similar to those of a priA2::kan mutant in Escherichia coli K-12.. Genetics. 167(2):569-78.\par \par de la Salmoni\'e8re Y-OLuc Goguet, Kim CC, Tsolaki AG, Pym AS, Siegrist MS, Small PM.\'a0 2004.\'a0\'a0High-throughput method for detecting genomic-deletion polymorphisms.. J Clin Microbiol. 42(7):2913-8.\par \par Holmes DE, Nevin KP, Lovley DR.\'a0 2004.\'a0\'a0In situ expression of nifD in Geobacteraceae in subsurface sediments.. Appl Environ Microbiol. 70(12):7251-9.\par \par Holmes DE, Bond DR, O'Neil RA, Reimers CE, Tender LR, Lovley DR.\'a0 2004.\'a0\'a0Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments.. Microb Ecol. 48(2):178-90.\par \par Tumwine JK, Kekitiinwa A, Nabukeera N, Akiyoshi DE, Rich SM, Widmer G, Feng X, Tzipori S.\'a0 2003.\'a0\'a0Cryptosporidium parvum in children with diarrhea in Mulago Hospital, Kampala, Uganda.. Am J Trop Med Hyg. 68(6):710-5.\par \par Cummings DE, Snoeyenbos-West OL, Newby DT, Niggemyer AM, Lovley DR, Achenbach LA, Rosenzweig RF.\'a0 2003.\'a0\'a0Diversity of Geobacteraceae species inhabiting metal-polluted freshwater lake sediments ascertained by 16S rDNA analyses.. Microb Ecol. 46(2):257-69.\par \par Nevin KP, Finneran KT, Lovley DR.\'a0 2003.\'a0\'a0Microorganisms associated with uranium bioremediation in a high-salinity subsurface sediment.. Appl Environ Microbiol. 69(6):3672-5.\par \par Feng X, Rich SM, Tzipori S, Widmer G.\'a0 2002.\'a0\'a0Experimental evidence for genetic recombination in the opportunistic pathogen Cryptosporidium parvum.. Mol Biochem Parasitol. 119(1):55-62.\par \par Hayes LA, Lovley DR.\'a0 2002.\'a0\'a0Specific 16S rDNA sequences associated with naphthalene degradation under sulfate-reducing conditions in harbor sediments.. Microb Ecol. 43(1):134-45.\par \par Stults JR, Snoeyenbos-West O, Methe B, Lovley DR, Chandler DP.\'a0 2001.\'a0\'a0Application of the 5' fluorogenic exonuclease assay (TaqMan) for quantitative ribosomal DNA and rRNA analysis in sediments.. Appl Environ Microbiol. 67(6):2781-9.\par \par Magnuson TS, Isoyama N, Hodges-Myerson AL, Davidson G, Maroney MJ, Geesey GG, Lovley DR.\'a0 2001.\'a0\'a0Isolation, characterization and gene sequence analysis of a membrane-associated 89 kDa Fe(III) reducing cytochrome c from Geobacter sulfurreducens.. Biochem J. 359(Pt 1):147-52.\par \par Widmer G, Akiyoshi D, Buckholt MA, Feng X, Rich SM, Deary KM, Bowman CA, Xu P, Wang Y, Wang X et al..\'a0 2000.\'a0\'a0Animal propagation and genomic survey of a genotype 1 isolate of Cryptosporidium parvum.. Mol Biochem Parasitol. 108(2):187-97.\par \par Feng X, Rich SM, Akiyoshi D, Tumwine JK, Kekitiinwa A, Nabukeera N, Tzipori S, Widmer G.\'a0 2000.\'a0\'a0Extensive polymorphism in Cryptosporidium parvum identified by multilocus microsatellite analysis.. Appl Environ Microbiol. 66(8):3344-9.\par \par Sandler SJ.\'a0 2000.\'a0\'a0Multiple genetic pathways for restarting DNA replication forks in Escherichia coli K-12.. Genetics. 155(2):487-97.\par \par Sandler SJ, Hugenholtz P, Schleper C, DeLong EF, Pace NR, Clark AJ.\'a0 1999.\'a0\'a0Diversity of radA genes from cultured and uncultured archaea: comparative analysis of putative RadA proteins and their use as a phylogenetic marker.. J Bacteriol. 181(3):907-15.\par \par Rooney-Varga JN, Anderson RT, Fraga JL, Ringelberg D, Lovley DR.\'a0 1999.\'a0\'a0Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer.. Appl Environ Microbiol. 65(7):3056-63.\par \par Coates JD, Ellis DJ, Blunt-Harris EL, Gaw CV, Roden EE, Lovley DR.\'a0 1998.\'a0\'a0Recovery of humic-reducing bacteria from a diversity of environments.. Appl Environ Microbiol. 64(4):1504-9.\par \par Caporale DA, Rich SM, Spielman A, Telford SR, Kocher TD.\'a0 1995.\'a0\'a0Discriminating between Ixodes ticks by means of mitochondrial DNA sequences.. Mol Phylogenet Evol. 4(4):361-5.\par \par Rich SM, Caporale DA, Telford SR, Kocher TD, Hartl DL, Spielman A.\'a0 1995.\'a0\'a0Distribution of the Ixodes ricinus-like ticks of eastern North America.. Proc Natl Acad Sci U S A. 92(14):6284-8.\par \par }