Zhao Z, Zhang Y, Holmes DE, Dang Y, Woodard TL, Nevin KP, Lovley DR.  2016.  Potential enhancement of direct interspecies electron transfer for syntrophic metabolism of propionate and butyrate with biochar in up-flow anaerobic sludge blanket reactors.. Bioresour Technol. 209:148-56.

Holmes DE, Giloteaux L, Williams KH, Wrighton KC, Wilkins MJ, Thompson CA, Roper TJ, Long PE, Lovley DR.  2013.  Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater.. ISME J. 7(7):1286-98.

Shelobolina ES, Nevin KP, Blakeney-Hayward JD, Johnsen CV, Plaia TW, Krader P, Woodard T, Holmes DE, Vanpraagh C G, Lovley DR.  2007.  Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.. Int J Syst Evol Microbiol. 57(Pt 1):126-35.

Holmes DE, Nevin KP, Woodard TL, Peacock AD, Lovley DR.  2007.  Prolixibacter bellariivorans gen. nov., sp. nov., a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell.. Int J Syst Evol Microbiol. 57(Pt 4):701-7.

Nevin KP, Holmes DE, Woodard TL, Covalla SF, Lovley DR.  2007.  Reclassification of Trichlorobacter thiogenes as Geobacter thiogenes comb. nov.. Int J Syst Evol Microbiol. 57(Pt 3):463-6.

Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP et al..  2007.  Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.. ISME J. 1(8):663-77.

Nevin KP, Holmes DE, Woodard TL, Hinlein ES, Ostendorf DW, Lovley DR.  2005.  Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates.. Int J Syst Evol Microbiol. 55(Pt 4):1667-74.

Holmes DE, Nevin KP, O'Neil RA, Ward JE, Adams LA, Woodard TL, Vrionis HA, Lovley DR.  2005.  Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes.. Appl Environ Microbiol. 71(11):6870-7.

Holmes DE, Nevin KP, Lovley DR.  2004.  Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.. Int J Syst Evol Microbiol. 54(Pt 5):1591-9.

Holmes DE, Nevin KP, Lovley DR.  2004.  In situ expression of nifD in Geobacteraceae in subsurface sediments.. Appl Environ Microbiol. 70(12):7251-9.

Holmes DE, Nicoll JS, Bond DR, Lovley DR.  2004.  Potential role of a novel psychrotolerant member of the family Geobacteraceae, Geopsychrobacter electrodiphilus gen. nov., sp. nov., in electricity production by a marine sediment fuel cell.. Appl Environ Microbiol. 70(10):6023-30.

Bond DR, Holmes DE, Tender LM, Lovley DR.  2002.  Electrode-reducing microorganisms that harvest energy from marine sediments.. Science. 295(5554):483-5.

Holmes DE, Finneran KT, O'Neil RA, Lovley DR.  2002.  Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments.. Appl Environ Microbiol. 68(5):2300-6.

Kashefi K, Tor JM, Holmes DE, Gaw Van Praagh CV, Reysenbach A-L, Lovley DR.  2002.  Geoglobus ahangari gen. nov., sp. nov., a novel hyperthermophilic archaeon capable of oxidizing organic acids and growing autotrophically on hydrogen with Fe(III) serving as the sole electron acceptor.. Int J Syst Evol Microbiol. 52(Pt 3):719-28.

Tender LM, Reimers CE, Stecher HA, Holmes DE, Bond DR, Lowy DA, Pilobello K, Fertig SJ, Lovley DR.  2002.  Harnessing microbially generated power on the seafloor.. Nat Biotechnol. 20(8):821-5.

Kashefi K, Holmes DE, Reysenbach A-L, Lovley DR.  2002.  Use of Fe(III) as an electron acceptor to recover previously uncultured hyperthermophiles: isolation and characterization of Geothermobacterium ferrireducens gen. nov., sp. nov.. Appl Environ Microbiol. 68(4):1735-42.