Szmuc E, Walker DJF, Kireev D, Akinwande D, Lovley DR, Keitz B, Ellington A.  2023.  Engineering Geobacter pili to produce metal:organic filaments.. Biosens Bioelectron. 222:114993.

Zhou E, Li F, Zhang D, Xu D, Li Z, Jia R, Jin Y, Song H, Li H, Wang Q et al..  2022.  Direct microbial electron uptake as a mechanism for stainless steel corrosion in aerobic environments.. Water Res. 219:118553.

Liu X, Ueki T, Gao H, Woodard TL, Nevin KP, Fu T, Fu S, Sun L, Lovley DR, Yao J.  2022.  Microbial biofilms for electricity generation from water evaporation and power to wearables.. Nat Commun. 13(1):4369.

Rivera SL, Espaillat A, Aditham AK, Shieh P, Muriel-Mundo C, Kim J, Cava F, M Siegrist S.  2021.  Chemically Induced Cell Wall Stapling in Bacteria.. Cell Chem Biol. 28(2):213-220.e4.

Liu X, Walker DJF, Nonnenmann SS, Sun D, Lovley DR.  2021.  Direct Observation of Electrically Conductive Pili Emanating from .. mBio. 12(4):e0220921.

Liang D, Liu X, Woodard TL, Holmes DE, Smith JA, Nevin KP, Feng Y, Lovley DR.  2021.  Extracellular Electron Exchange Capabilities of  and .. Environ Sci Technol. 55(23):16195-16203.

García-Heredia A, Kado T, Sein CE, Puffal J, Osman SH, Judd J, Gray TA, Morita YS, M Siegrist S.  2021.  Membrane-partitioned cell wall synthesis in mycobacteria.. Elife. 10

Lekbach Y, Liu T, Li Y, Moradi M, Dou W, Xu D, Smith JA, Lovley DR.  2021.  Microbial corrosion of metals: The corrosion microbiome.. Adv Microb Physiol. 78:317-390.

Sun Y-L, Montz BJ, Selhorst R, Tang H-Y, Zhu J, Nevin KP, Woodard TL, Ribbe AE, Russell TP, Nonnenmann SS et al..  2021.  Solvent-Induced Assembly of Microbial Protein Nanowires into Superstructured Bundles.. Biomacromolecules. 22(3):1305-1311.

Pohane AArunrao, Carr CR, Garhyan J, Swarts BM, M Siegrist S.  2021.  Trehalose Recycling Promotes Energy-Efficient Biosynthesis of the Mycobacterial Cell Envelope.. mBio. 12(1)

Brown AR, Gordon RA, Hyland SN, M Siegrist S, Grimes CL.  2020.  Chemical Biology Tools for Examining the Bacterial Cell Wall.. Cell Chem Biol. 27(8):1052-1062.

Kavunja HW, Biegas KJ, Banahene N, Stewart JA, Piligian BF, Groenevelt JM, Sein CE, Morita YS, Niederweis M, M Siegrist S et al..  2020.  Photoactivatable Glycolipid Probes for Identifying Mycolate-Protein Interactions in Live Mycobacteria.. J Am Chem Soc. 142(17):7725-7731.

Koyasseril-Yehiya TM, García-Heredia A, Anson F, Rangadurai P, M Siegrist S, Thayumanavan S.  2020.  Supramolecular antibiotics: a strategy for conversion of broad-spectrum to narrow-spectrum antibiotics for .. Nanoscale. 12(40):20693-20698.

Filman DJ, Marino SF, Ward JE, Yang L, Mester Z, Bullitt E, Lovley DR, Strauss M.  2019.  Cryo-EM reveals the structural basis of long-range electron transport in a cytochrome-based bacterial nanowire.. Commun Biol. 2:219.

Fiolek TJ, Banahene N, Kavunja HW, Holmes NJ, Rylski AK, Pohane AArunrao, M Siegrist S, Swarts BM.  2019.  Engineering the Mycomembrane of Live Mycobacteria with an Expanded Set of Trehalose Monomycolate Analogues.. Chembiochem. 20(10):1282-1291.

Holmes DE, Ueki T, Tang H-Y, Zhou J, Smith JA, Chaput G, Lovley DR.  2019.  A Membrane-Bound Cytochrome Enables  To Conserve Energy from Extracellular Electron Transfer.. mBio. 10(4)

Sun Y-L, Tang H-Y, Ribbe A, Duzhko V, Woodard TL, Ward JE, Bai Y, Nevin KP, Nonnenmann SS, Russell T et al..  2018.  Conductive Composite Materials Fabricated from Microbially Produced Protein Nanowires.. Small. 14(44):e1802624.

Melzer ES, Sein CE, Siegrist MS, Chambers JJ.  2018.  DivIVA concentrates mycobacterial cell envelope assembly for initiation and stabilization of polar growth.. Cytoskeleton. 75(12)

Holmes DE, Rotaru A-E, Ueki T, Shrestha PM, Ferry JG, Lovley DR.  2018.  Electron and Proton Flux for Carbon Dioxide Reduction in  During Direct Interspecies Electron Transfer.. Front Microbiol. 9:3109.

García-Heredia A, Pohane AArunrao, Melzer ES, Carr CR, Fiolek TJ, Rundell SR, Lim HChuin, Wagner JC, Morita YS, Swarts BM et al..  2018.  Peptidoglycan precursor synthesis along the sidewall of pole-growing mycobacteria. {eLife}. 7

Holmes DE, Orelana R, Giloteaux L, Wang L-Y, Shrestha P, Williams K, Lovley DR, Rotaru A-E.  2018.  Potential for Methanosarcina to Contribute to Uranium Reduction during Acetate-Promoted Groundwater Bioremediation.. Microb Ecol. 76(3):660-667.

Puffal J, García-Heredia A, Rahlwes KC, M Siegrist S, Morita YS.  2018.  Spatial control of cell envelope biosynthesis in mycobacteria. Pathogens and Disease. 76

Hayashi JM, Richardson K, Melzer ES, Sandler SJ, Aldridge BB, M. Siegrist S, Morita YS.  2018.  Stress-Induced Reorganization of the Mycobacterial Membrane Domain. {mBio}. 9

Holmes DE, Shrestha PM, Walker DJF, Dang Y, Nevin KP, Woodard TL, Lovley DR.  2017.  Metatranscriptomic Evidence for Direct Interspecies Electron Transfer between Geobacter and Methanothrix Species in Methanogenic Rice Paddy Soils.. Appl Environ Microbiol. 83(9)

Muller M, Glaunsinger BA.  2017.  Nuclease escape elements protect messenger RNA against cleavage by multiple viral endonucleases. PLOS Pathogens. 13:e1006593.

Aklujkar M, Leang C, Shrestha PM, Shrestha M, Lovley DR.  2017.  Transcriptomic profiles of Clostridium ljungdahlii during lithotrophic growth with syngas or H and CO compared to organotrophic growth with fructose.. Sci Rep. 7(1):13135.

Dang Y, Holmes DE, Zhao Z, Woodard TL, Zhang Y, Sun D, Wang L-Y, Nevin KP, Lovley DR.  2016.  Enhancing anaerobic digestion of complex organic waste with carbon-based conductive materials.. Bioresour Technol. 220:516-522.

Stewart LC, Llewellyn JG, Butterfield DA, Lilley MD, Holden JF.  2016.  Hydrogen and thiosulfate limits for growth of a thermophilic, autotrophic Desulfurobacterium species from a deep-sea hydrothermal vent.. Environ Microbiol Rep. 8(2):196-200.

Tan Y, Adhikari RY, Malvankar NS, Ward JE, Nevin KP, Woodard TL, Smith JA, Snoeyenbos-West OL, Franks AE, Tuominen MT et al..  2016.  The Low Conductivity of Geobacter uraniireducens Pili Suggests a Diversity of Extracellular Electron Transfer Mechanisms in the Genus Geobacter.. Front Microbiol. 7:980.

Xiao K, Malvankar NS, Shu C, Martz E, Lovley DR, Sun X.  2016.  Low Energy Atomic Models Suggesting a Pilus Structure that could Account for Electrical Conductivity of Geobacter sulfurreducens Pili.. Sci Rep. 6:23385.

Fang B, Jiang Y, Nüsslein K, Rotello VM, Santore MM.  2015.  Antimicrobial surfaces containing cationic nanoparticles: how immobilized, clustered, and protruding cationic charge presentation affects killing activity and kinetics.. Colloids Surf B Biointerfaces. 125:255-63.

Kim Y-T, Jung J-H, Stewart LC, Kwon S-W, Holden JF, Park C-S.  2015.  Complete genome sequence of the hyperthermophilic methanogen Methanocaldococcus bathoardescens JH146(T) isolated from the basalt subseafloor.. Mar Genomics. 24 Pt 3:229-30.

M Siegrist S, Aditham AK, Espaillat A, Cameron TA, Whiteside SA, Cava F, Portnoy DA, Bertozzi CR.  2015.  Host Actin Polymerization Tunes the Cell Division Cycle of an Intracellular Pathogen.. Cell Rep. 

M Siegrist S, Swarts BM, Fox DM, Lim SAn, Bertozzi CR.  2015.  Illumination of growth, division and secretion by metabolic labeling of the bacterial cell surface.. FEMS Microbiol Rev. 39(2):184-202.

Liu F, Rotaru A-E, Shrestha PM, Malvankar NS, Nevin KP, Lovley DR.  2015.  Magnetite compensates for the lack of a pilin-associated c-type cytochrome in extracellular electron exchange.. Environ Microbiol. 17(3):648-55.

Wang DT, Gruen DS, Lollar BSherwood, Hinrichs K-U, Stewart LC, Holden JF, Hristov AN, Pohlman JW, Morrill PL, Könneke M et al..  2015.  Methane cycling. Nonequilibrium clumped isotope signals in microbial methane.. Science. 348(6233):428-31.

Stewart LC, Jung J-H, Kim Y-T, Kwon S-W, Park C-S, Holden JF.  2015.  Methanocaldococcus bathoardescens sp. nov., a hyperthermophilic methanogen isolated from a volcanically active deep-sea hydrothermal vent.. Int J Syst Evol Microbiol. 65(Pt 4):1280-3.

Sang H, Hulvey J, Popko JT, Lopes J, Swaminathan A, Chang T, Jung G.  2015.  A pleiotropic drug resistance transporter is involved in reduced sensitivity to multiple fungicide classes in Sclerotinia homoeocarpa (F.T. Bennett).. Mol Plant Pathol. 16(3):251-61.

Holmes DE, Nevin KP, Snoeyenbos-West OL, Woodard TL, Strickland JN, Lovley DR.  2015.  Protozoan grazing reduces the current output of microbial fuel cells.. Bioresour Technol. 193:8-14.

Fimlaid KA, Jensen O, M Donnelly L, M Siegrist S, Shen A.  2015.  Regulation of Clostridium difficile Spore Formation by the SpoIIQ and SpoIIIA Proteins.. PLoS Genet. 11(10):e1005562.

Smith JA, Nevin KP, Lovley DR.  2015.  Syntrophic growth via quinone-mediated interspecies electron transfer.. Front Microbiol. 6:121.

Jeon E-J, Jung J-H, Seo D-H, Jung D-H, Holden JF, Park C-S.  2014.  Bioinformatic and biochemical analysis of a novel maltose-forming ?-amylase of the GH57 family in the hyperthermophilic archaeon Thermococcus sp. CL1.. Enzyme Microb Technol. 60:9-15.

Jung J-H, Kim Y-T, Jeon E-J, Seo D-H, Hensley SA, Holden JF, Lee J-H, Park C-S.  2014.  Complete genome sequence of hyperthermophilic archaeon Thermococcus sp. ES1.. J Biotechnol. 174C:14-15.

Shrestha PMalla, Malvankar NS, Werner JJ, Franks AE, Elena-Rotaru A, Shrestha M, Liu F, Nevin KP, Angenent LT, Lovley DR.  2014.  Correlation between microbial community and granule conductivity in anaerobic bioreactors for brewery wastewater treatment.. Bioresour Technol. 174:306-10.

Rotaru A-E, Shrestha PMalla, Liu F, Markovaite B, Chen S, Nevin KP, Lovley DR.  2014.  Direct interspecies electron transfer between Geobacter metallireducens and Methanosarcina barkeri.. Appl Environ Microbiol. 80(15):4599-605.

Shanmugam R, Aklujkar M, Schäfer M, Reinhardt R, Nickel O, Reuter G, Lovley DR, Ehrenhofer-Murray A, Nellen W, Ankri S et al..  2014.  The Dnmt2 RNA methyltransferase homolog of Geobacter sulfurreducens specifically methylates tRNA-Glu.. Nucleic Acids Res. 42(10):6487-96.

Fang B, Jiang Y, Rotello VM, Nüsslein K, Santore MM.  2014.  Easy come easy go: surfaces containing immobilized nanoparticles or isolated polycation chains facilitate removal of captured Staphylococcus aureus by retarding bacterial bond maturation.. ACS Nano. 8(2):1180-90.

Smith JA, Tremblay P-L, Shrestha PMalla, Snoeyenbos-West OL, Franks AE, Nevin KP, Lovley DR.  2014.  Going wireless: Fe(III) oxide reduction without pili by Geobacter sulfurreducens strain JS-1.. Appl Environ Microbiol. 80(14):4331-40.

Jung J-H, Seo D-H, Holden JF, Park C-S.  2014.  Identification and Characterization of an Archaeal Kojibiose Catabolic Pathway in the Hyperthermophilic Pyrococcus sp. Strain ST04.. J Bacteriol. 196(5):1122-31.

Zhang T, Tremblay P-L, Chaurasia AK, Smith JA, Bain TS, Lovley DR.  2014.  Identification of genes specifically required for the anaerobic metabolism of benzene in Geobacter metallireducens.. Front Microbiol. 5:245.

Shieh P, M Siegrist S, Cullen AJ, Bertozzi CR.  2014.  Imaging bacterial peptidoglycan with near-infrared fluorogenic azide probes.. Proc Natl Acad Sci U S A. 111(15):5456-61.

Jung J-H, Seo D-H, Holden JF, Park C-S.  2014.  Maltose-forming ?-amylase from the hyperthermophilic archaeon Pyrococcus sp. ST04.. Appl Microbiol Biotechnol. 98(5):2121-31.

M Siegrist S, Steigedal M, Ahmad R, Mehra A, Dragset MS, Schuster BM, Philips JA, Carr SA, Rubin EJ.  2014.  Mycobacterial Esx-3 requires multiple components for iron acquisition.. MBio. 5(3):e01073-14.

M Siegrist S, Bertozzi CR.  2014.  Mycobacterial lipid logic.. Cell Host Microbe. 15(1):1-2.

Chen S, Rotaru A-E, Shrestha PMalla, Malvankar NS, Liu F, Fan W, Nevin KP, Lovley DR.  2014.  Promoting interspecies electron transfer with biochar.. Sci Rep. 4:5019.

Orellana R, Hixson KK, Murphy S, Mester T, Sharma ML, Lipton MS, Lovley DR.  2014.  Proteome of Geobacter sulfurreducens in the presence of U(VI).. Microbiology (Reading). 160(Pt 12):2607-2617.

Sha K, Choi S-H, Im J, Lee GG, Loeffler F, Park JH.  2014.  Regulation of ethanol-related behavior and ethanol metabolism by the Corazonin neurons and Corazonin receptor in Drosophila melanogaster.. PLoS One. 9(1):e87062.

Salas-Santiago B, Lopes JM.  2014.  Saccharomyces cerevisiae essential genes with an Opi- phenotype.. G3 (Bethesda). 4(4):761-7.

Meniche X, Otten R, M Siegrist S, Baer CE, Murphy KC, Bertozzi CR, Sassetti CM.  2014.  Subpolar addition of new cell wall is directed by DivIVA in mycobacteria.. Proc Natl Acad Sci U S A. 111(31):E3243-51.

Zhang T, Bain TS, Barlett MA, Dar SA, Snoeyenbos-West OL, Nevin KP, Lovley DR.  2014.  Sulfur oxidation to sulfate coupled with electron transfer to electrodes by Desulfuromonas strain TZ1.. Microbiology (Reading). 160(Pt 1):123-129.

Zhang T, Tremblay P-L, Chaurasia AKumar, Smith JA, Bain TS, Lovley DR.  2013.  Anaerobic benzene oxidation via phenol in Geobacter metallireducens.. Appl Environ Microbiol. 79(24):7800-6.

Vargas M, Malvankar NS, Tremblay P-L, Leang C, Smith JA, Patel P, Snoeyenbos-West O, Nevin KP, Lovley DR.  2013.  Aromatic amino acids required for pili conductivity and long-range extracellular electron transport in Geobacter sulfurreducens.. mBio. 4(2):e00105-13.

DeAngelis KM, Chivian D, Fortney J, Simmons BA, Hazen TC, Silver WL.  2013.  Changes in microbial dynamics during long-term decomposition in tropical forests.. Soil Biology and Biochemistry. 66:60-68.

Nagarajan H, Embree M, Rotaru A-E, Shrestha PM, Feist AM, Palsson BØ, Lovley DR, Zengler K.  2013.  Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association.. Nat Commun. 4:2809.

Giloteaux L, Holmes DE, Williams KH, Wrighton KC, Wilkins MJ, Montgomery AP, Smith JA, Orellana R, Thompson CA, Roper TJ et al..  2013.  Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation.. ISME J. 7(2):370-83.

Nagarajan H, Sahin M, Nogales J, Latif H, Lovley DR, Ebrahim A, Zengler K.  2013.  Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii.. Microb Cell Fact. 12:118.

Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Juárez K, Cho B-K, Elkins JG, Nevin KP, Barrett CL et al..  2013.  Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.. Nat Commun. 4:1755.

M Siegrist S, Whiteside S, Jewett JC, Aditham A, Cava F, Bertozzi CR.  2013.  (D)-Amino acid chemical reporters reveal peptidoglycan dynamics of an intracellular pathogen.. ACS Chem Biol. 8(3):500-5.

Deangelis KM, Sharma D, Varney R, Simmons B, Isern NG, Markilllie LM, Nicora C, Norbeck AD, Taylor RC, Aldrich JT et al..  2013.  Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1.. Front Microbiol. 4:280.

Lizik W, Im J, Semrau JD, Barcelona MJ.  2013.  A field trial of nutrient stimulation of methanotrophs to reduce greenhouse gas emissions from landfill cover soils.. J Air Waste Manag Assoc. 63(3):300-9.

Deangelis KM, D'haeseleer P, Chivian D, Simmons B, Arkin AP, Mavromatis K, Malfatti S, Tringe S, Hazen TC.  2013.  Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.. Stand Genomic Sci. 7(3):382-98.

Holmes DE, Giloteaux L, Barlett M, Chavan MA, Smith JA, Williams KH, Wilkins M, Long P, Lovley DR.  2013.  Molecular analysis of the in situ growth rates of subsurface Geobacter species.. Appl Environ Microbiol. 79(5):1646-53.

Lee J-E, Kim I-H, Jung J-H, Seo D-H, Kang S-G, Holden JF, Cha J, Park C-S.  2013.  Molecular cloning and enzymatic characterization of cyclomaltodextrinase from hyperthermophilic archaeon Thermococcus sp. CL1.. J Microbiol Biotechnol. 23(8):1060-9.

Hatzios SK, Baer CE, Rustad TR, M Siegrist S, Pang JM, Ortega C, Alber T, Grundner C, Sherman DR, Bertozzi CR.  2013.  Osmosensory signaling in Mycobacterium tuberculosis mediated by a eukaryotic-like Ser/Thr protein kinase.. Proc Natl Acad Sci U S A. 110(52):E5069-77.

Smith JA, Lovley DR, Tremblay P-L.  2013.  Outer cell surface components essential for Fe(III) oxide reduction by Geobacter metallireducens.. Appl Environ Microbiol. 79(3):901-7.

Shrestha PMalla, Rotaru A-E, Aklujkar M, Liu F, Shrestha M, Summers ZM, Malvankar N, Flores DCarlo, Lovley DR.  2013.  Syntrophic growth with direct interspecies electron transfer as the primary mechanism for energy exchange.. Environ Microbiol Rep. 5(6):904-10.

Shetty A, Swaminathan A, Lopes JM.  2013.  Transcription regulation of a yeast gene from a downstream location.. J Mol Biol. 425(3):457-65.

Shrestha PMalla, Rotaru A-E, Summers ZM, Shrestha M, Liu F, Lovley DR.  2013.  Transcriptomic and genetic analysis of direct interspecies electron transfer.. Appl Environ Microbiol. 79(7):2397-404.

Shrestha PMalla, Nevin KP, Shrestha M, Lovley DR.  2013.  When is a microbial culture "pure"? Persistent cryptic contaminant escapes detection even with deep genome sequencing. mBio. 4(2):e00591-12.

Deangelis KM, Fortney JL, Borglin S, Silver WL, Simmons BA, Hazen TC.  2012.  Anaerobic decomposition of switchgrass by tropical soil-derived feedstock-adapted consortia.. MBio. 3(1)

McKeever R, Sheppard D, Nüsslein K, Baek K-H, Rieber K, Ergas SJ, Forbes R, Hilyard M, Park C.  2012.  Biodegradation of ethylene dibromide (1,2-dibromoethane [EDB]) in microcosms simulating in situ and biostimulated conditions.. J Hazard Mater. 209-210:92-8.

Jung J-H, Lee J-H, Holden JF, Seo D-H, Shin H, Kim H-Y, Kim W, Ryu S, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge.. J Bacteriol. 194(16):4434-5.

Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.

Massoni SC, Leeson MC, Long J E, Gemme K, Mui A, Sandler SJ.  2012.  Factors Limiting SOS Expression in Log-Phase Cells of Escherichia coli.. J Bacteriol. 194(19):5325-33.

Holmes DE, Risso C, Smith JA, Lovley DR.  2012.  Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus.. ISME J. 6(1):146-57.

Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP.  2012.  Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus.. Proc Natl Acad Sci U S A. 109(32):E2173-82.

Gon S, Kumar K-N, Nüsslein K, Santore MM.  2012.  How Bacteria Adhere to Brushy PEG Surfaces: Clinging to Flaws and Compressing the Brush.. Macromolecules. 45(20):8373-8381.

Rotaru A-E, Shrestha PM, Liu F, Ueki T, Nevin K, Summers ZM, Lovley DR.  2012.  Interspecies electron transfer via hydrogen and formate rather than direct electrical connections in cocultures of Pelobacter carbinolicus and Geobacter sulfurreducens.. Appl Environ Microbiol. 78(21):7645-51.

Summers ZM, Ueki T, Ismail W, Haveman SA, Lovley DR.  2012.  Laboratory evolution of Geobacter sulfurreducens for enhanced growth on lactate via a single-base-pair substitution in a transcriptional regulator.. ISME J. 6(5):975-83.

Baek K, McKeever R, Rieber K, Sheppard D, Park C, Ergas SJ, Nüsslein K.  2012.  Molecular approach to evaluate biostimulation of 1,2-dibromoethane in contaminated groundwater.. Bioresour Technol. 123C:207-213.

Jang S, Sandler SJ, Harshey RM.  2012.  Mu insertions are repaired by the double-strand break repair pathway of Escherichia coli.. PLoS Genet. 8(4):e1002642.

Li Y, Kumar KN, Dabkowski JM, Corrigan M, Scott RW, Nüsslein K, Tew GN.  2012.  New bactericidal surgical suture coating.. Langmuir. 28(33):12134-9.

Patel KK, Anderson EA, Salva PS, Webley WC.  2012.  The prevalence and identity of Chlamydia-specific IgE in children with asthma and other chronic respiratory symptoms.. Respir Res. 13(1):32.

Swarts BM, Holsclaw CM, Jewett JC, Alber M, Fox DM, M Siegrist S, Leary JA, Kalscheuer R, Bertozzi CR.  2012.  Probing the mycobacterial trehalome with bioorthogonal chemistry.. J Am Chem Soc. 134(39):16123-6.

Unal B, Perry V R, Sheth M, Gomez-Alvarez V, Chin K-J, Nüsslein K.  2012.  Trace elements affect methanogenic activity and diversity in enrichments from subsurface coal bed produced water.. Front Microbiol. 3:175.

He Y, Swaminathan A, Lopes JM.  2012.  Transcription regulation of the Saccharomyces cerevisiae PHO5 gene by the Ino2p and Ino4p basic helix-loop-helix proteins.. Mol Microbiol. 83(2):395-407.

Richter LV, Sandler SJ, Weis RM.  2012.  Two isoforms of Geobacter sulfurreducens PilA have distinct roles in pilus biogenesis, cytochrome localization, extracellular electron transfer, and biofilm formation.. J Bacteriol. 194(10):2551-63.

Fang B, Gon S, Park M-H, Kumar K-N, Rotello VM, Nüsslein K, Santore MM.  2012.  Using flow to switch the valency of bacterial capture on engineered surfaces containing immobilized nanoparticles.. Langmuir. 28(20):7803-10.

Holmes DE, Risso C, Smith JA, Lovley DR.  2011.  Anaerobic oxidation of benzene by the hyperthermophilic archaeon Ferroglobus placidus.. Appl Environ Microbiol. 77(17):5926-33.

Fang B, Gon S, Park M, Kumar K-N, Rotello VM, Nusslein K, Santore MM.  2011.  Bacterial adhesion on hybrid cationic nanoparticle-polymer brush surfaces: ionic strength tunes capture from monovalent to multivalent binding.. Colloids Surf B Biointerfaces. 87(1):109-15.

Qian X, Mester T, Morgado L, Arakawa T, Sharma ML, Inoue K, Joseph C, Salgueiro CA, Maroney MJ, Lovley DR.  2011.  Biochemical characterization of purified OmcS, a c-type cytochrome required for insoluble Fe(III) reduction in Geobacter sulfurreducens.. Biochim Biophys Acta. 1807(4):404-12.

Im J, Lee S-W, Yoon S, Dispirito AA, Semrau JD.  2011.  Characterization of a novel facultative Methylocystis species capable of growth on methane, acetate and ethanol.. Environ Microbiol Rep. 3(2):174-81.

Deangelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC.  2011.  Characterization of trapped lignin-degrading microbes in tropical forest soil.. PLoS One. 6(4):e19306.

Patel KK, Salva PS, Webley WC.  2011.  Colonization of paediatric lower respiratory tract with genital Mycoplasma species.. Respirology. 16(7):1081-7.

Deangelis KM, D'haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport K W, Goodwin L et al..  2011.  Complete genome sequence of "Enterobacter lignolyticus" SCF1.. Stand Genomic Sci. 5(1):69-85.

Yoon S, Im J, Bandow N, Dispirito AA, Semrau JD.  2011.  Constitutive expression of pMMO by Methylocystis strain SB2 when grown on multi-carbon substrates: implications for biodegradation of chlorinated ethenes.. Environ Microbiol Rep. 3(2):182-8.

Tremblay P-L, Summers ZM, Glaven RH, Nevin KP, Zengler K, Barrett CL, Qiu Y, Palsson BO, Lovley DR.  2011.  A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.. Environ Microbiol. 13(1):13-23.

Fang Y, Scheibe TD, Mahadevan R, Garg S, Long PE, Lovley DR.  2011.  Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model.. J Contam Hydrol. 122(1-4):96-103.

Shi S, Richardson AE, O'Callaghan M, Deangelis KM, Jones EE, Stewart A, Firestone MK, Condron LM.  2011.  Effects of selected root exudate components on soil bacterial communities.. FEMS Microbiol Ecol. 77(3):600-10.

Nevin KP, Hensley SA, Franks AE, Summers ZM, Ou J, Woodard TL, Snoeyenbos-West OL, Lovley DR.  2011.  Electrosynthesis of organic compounds from carbon dioxide is catalyzed by a diversity of acetogenic microorganisms.. Appl Environ Microbiol. 77(9):2882-6.

Im J, Lee S-W, Bodrossy L, Barcelona MJ, Semrau JD.  2011.  Field application of nitrogen and phenylacetylene to mitigate greenhouse gas emissions from landfill cover soils: effects on microbial community structure.. Appl Microbiol Biotechnol. 89(1):189-200.

Strycharz SM, Glaven RH, Coppi MV, Gannon SM, Perpetua LA, Liu A, Nevin KP, Lovley DR.  2011.  Gene expression and deletion analysis of mechanisms for electron transfer from electrodes to Geobacter sulfurreducens.. Bioelectrochemistry. 80(2):142-50.

Krushkal J, Sontineni S, Leang C, Qu Y, Adkins RM, Lovley DR.  2011.  Genome diversity of the TetR family of transcriptional regulators in a metal-reducing bacterial family Geobacteraceae and other microbial species.. OMICS. 15(7-8):495-506.

Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru A-E et al..  2011.  Geobacter: the microbe electric's physiology, ecology, and practical applications.. Adv Microb Physiol. 59:1-100.

Morita YS, Fukuda T, Sena CBC, Yamaryo-Botte Y, McConville MJ, Kinoshita T.  2011.  Inositol lipid metabolism in mycobacteria: biosynthesis and regulatory mechanisms.. Biochim Biophys Acta. 1810(6):630-41.

Deangelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME et al..  2011.  PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.. Appl Environ Microbiol. 77(18):6313-22.

Im J, Semrau JD.  2011.  Pollutant degradation by a Methylocystis strain SB2 grown on ethanol: bioremediation via facultative methanotrophy.. FEMS Microbiol Lett. 318(2):137-42.

Oslowski DM, Jung J-H, Seo D-H, Park C-S, Holden JF.  2011.  Production of hydrogen from ?-1,4- and ?-1,4-linked saccharides by marine hyperthermophilic Archaea.. Appl Environ Microbiol. 77(10):3169-73.

Prilusky J, Hodis E, Canner D, Decatur WA, Oberholser K, Martz E, Berchanski A, Harel M, Sussman JL.  2011.  Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.. J Struct Biol. 175(2):244-52.

Springer AL, Bruhn DF, Kinzel KW, Rosenthal NF, Zukas R, Klingbeil MM.  2011.  Silencing of a putative inner arm dynein heavy chain results in flagellar immotility in Trypanosoma brucei.. Mol Biochem Parasitol. 175(1):68-75.

Marceau AH, Bahng S, Massoni SC, George NP, Sandler SJ, Marians KJ, Keck JL.  2011.  Structure of the SSB-DNA polymerase III interface and its role in DNA replication.. EMBO J. 30(20):4236-47.

Bruhn DF, Sammartino MP, Klingbeil MM.  2011.  Three mitochondrial DNA polymerases are essential for kinetoplast DNA replication and survival of bloodstream form Trypanosoma brucei.. Eukaryot Cell. 10(6):734-43.

Callister SJ, Wilkins MJ, Nicora CD, Williams KH, Banfield JF, VerBerkmoes NC, Hettich RL, N'Guessan L, Mouser PJ, Elifantz H et al..  2010.  Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles.. Environ Sci Technol. 44(23):8897-903.

Stout L, Nüsslein K.  2010.  Biotechnological potential of aquatic plant-microbe interactions.. Curr Opin Biotechnol. 21(3):339-45.

Sandler SJI, Figaji AA, Adelson DP.  2010.  Clinical applications of biomarkers in pediatric traumatic brain injury.. Childs Nerv Syst. 26(2):205-13.

Sun J, Haveman SA, Bui O, Fahland TR, Lovley DR.  2010.  Constraint-based modeling analysis of the metabolism of two Pelobacter species.. BMC Syst Biol. 4:174.

Sena CBC, Fukuda T, Miyanagi K, Matsumoto S, Kobayashi K, Murakami Y, Maeda Y, Kinoshita T, Morita YS.  2010.  Controlled expression of branch-forming mannosyltransferase is critical for mycobacterial lipoarabinomannan biosynthesis.. J Biol Chem. 285(18):13326-36.

Shetty A, Lopes JM.  2010.  Derepression of INO1 transcription requires cooperation between the Ino2p-Ino4p heterodimer and Cbf1p and recruitment of the ISW2 chromatin-remodeling complex.. Eukaryot Cell. 9(12):1845-55.

Summers ZM, Fogarty HE, Leang C, Franks AE, Malvankar NS, Lovley DR.  2010.  Direct exchange of electrons within aggregates of an evolved syntrophic coculture of anaerobic bacteria.. Science. 330(6009):1413-5.

Patel KK, Vicencio AG, Du Z, Tsirilakis K, Salva PS, Webley WC.  2010.  Infectious Chlamydia pneumoniae is associated with elevated interleukin-8 and airway neutrophilia in children with refractory asthma.. Pediatr Infect Dis J. 29(12):1093-8.

Yang T H, Coppi MV, Lovley DR, Sun J.  2010.  Metabolic response of Geobacter sulfurreducens towards electron donor/acceptor variation.. Microb Cell Fact. 9:90.

Deangelis KM, Silver WL, Thompson AW, Firestone MK.  2010.  Microbial communities acclimate to recurring changes in soil redox potential status.. Environ Microbiol. 12(12):3137-49.

Nevin KP, Woodard TL, Franks AE, Summers ZM, Lovley DR.  2010.  Microbial electrosynthesis: feeding microbes electricity to convert carbon dioxide and water to multicarbon extracellular organic compounds.. MBio. 1(2)

Zhao J, Fang Y, Scheibe TD, Lovley DR, Mahadevan R.  2010.  Modeling and sensitivity analysis of electron capacitance for Geobacter in sedimentary environments.. J Contam Hydrol. 112(1-4):30-44.

Stout LM, Dodova EN, Tyson JF, Nüsslein K.  2010.  Phytoprotective influence of bacteria on growth and cadmium accumulation in the aquatic plant Lemna minor.. Water Res. 44(17):4970-9.

Inoue K, Qian X, Morgado L, Kim B-C, Mester T, Izallalen M, Salgueiro CA, Lovley DR.  2010.  Purification and characterization of OmcZ, an outer-surface, octaheme c-type cytochrome essential for optimal current production by Geobacter sulfurreducens.. Appl Environ Microbiol. 76(12):3999-4007.

Long J E, Massoni SC, Sandler SJ.  2010.  RecA4142 causes SOS constitutive expression by loading onto reversed replication forks in Escherichia coli K-12.. J Bacteriol. 192(10):2575-82.

Kalasin S, Dabkowski J, Nüsslein K, Santore MM.  2010.  The role of nano-scale heterogeneous electrostatic interactions in initial bacterial adhesion from flow: a case study with Staphylococcus aureus.. Colloids Surf B Biointerfaces. 76(2):489-95.

Sagaram U S, Deangelis KM, Trivedi P, Andersen GL, Lu S-E, Wang N.  2009.  Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing.. Appl Environ Microbiol. 75(6):1566-74.

Sahu AK, Conneely T, Nüsslein KR, Ergas SJ.  2009.  Biological perchlorate reduction in packed bed reactors using elemental sulfur.. Environ Sci Technol. 43(12):4466-71.

Walk ST, Xu G, Stull JW, Rich SM.  2009.  Correlation between tick density and pathogen endemicity, New Hampshire.. Emerg Infect Dis. 15(4):585-7.

Scheibe TD, Mahadevan R, Fang Y, Garg S, Long PE, Lovley DR.  2009.  Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.. Microb Biotechnol. 2(2):274-86.

Lienkamp K, Kumar K-N, Som A, Nüsslein K, Tew GN.  2009.  "Doubly selective" antimicrobial polymers: how do they differentiate between bacteria? Chemistry. 15(43):11710-4.

Lee S-W, Im J, Dispirito AA, Bodrossy L, Barcelona MJ, Semrau JD.  2009.  Effect of nutrient and selective inhibitor amendments on methane oxidation, nitrous oxide production, and key gene presence and expression in landfill cover soils: characterization of the role of methanotrophs, nitrifiers, and denitrifiers.. Appl Microbiol Biotechnol. 85(2):389-403.

Risso C, Sun J, Zhuang K, Mahadevan R, DeBoy R, Ismail W, Shrivastava S, Huot H, Kothari S, Daugherty S et al..  2009.  Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.. BMC Genomics. 10:447.

Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R.  2009.  Genome-scale constraint-based modeling of Geobacter metallireducens.. BMC Syst Biol. 3:15.

Leang C, Krushkal J, Ueki T, Puljic M, Sun J, Juárez K, Núñez C, Reguera G, DiDonato R, Postier B et al..  2009.  Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens.. BMC Genomics. 10:331.

Sahu AK, Conneely T, Nüsslein K, Ergas SJ.  2009.  Hydrogenotrophic denitrification and perchlorate reduction in ion exchange brines using membrane biofilm reactors.. Biotechnol Bioeng. 104(3):483-91.

M Siegrist S, Unnikrishnan M, McConnell MJ, Borowsky M, Cheng T-Y, Siddiqi N, Fortune SM, D Moody B, Rubin EJ.  2009.  Mycobacterial Esx-3 is required for mycobactin-mediated iron acquisition.. Proc Natl Acad Sci U S A. 106(44):18792-7.

Webley WC, Tilahun Y, Lay K, Patel K, Stuart ES, Andrzejewski C, Salva PS.  2009.  Occurrence of Chlamydia trachomatis and Chlamydia pneumoniae in paediatric respiratory infections.. Eur Respir J. 33(2):360-7.

M Siegrist S, Rubin EJ.  2009.  Phage transposon mutagenesis.. Methods Mol Biol. 465:311-23.

Wilkins MJ, VerBerkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan LA, Thomas BC, Nicora CD, Shah MB et al..  2009.  Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.. Appl Environ Microbiol. 75(20):6591-9.

Handa N, Amitani I, Gumlaw N, Sandler SJ, Kowalczykowski SC.  2009.  Single molecule analysis of a red fluorescent RecA protein reveals a defect in nucleoprotein filament nucleation that relates to its reduced biological functions.. J Biol Chem. 284(28):18664-73.

Long JE, Renzette N, Sandler SJ.  2009.  Suppression of constitutive SOS expression by recA4162 (I298V) and recA4164 (L126V) requires UvrD and RecX in Escherichia coli K-12.. Mol Microbiol. 73(2):226-39.

Garcia-Maruniak A, Abd-Alla AMM, Salem TZ, Parker AG, Lietze V-U, van Oers MM, Maruniak JE, Kim W, Burand JP, Cousserans F et al..  2009.  Two viruses that cause salivary gland hypertrophy in Glossina pallidipes and Musca domestica are related and form a distinct phylogenetic clade.. J Gen Virol. 90(Pt 2):334-46.

Klingbeil MM, Shapiro TA.  2009.  Unraveling the secrets of regulating mitochondrial DNA replication.. Mol Cell. 35(4):398-400.

Centore RC, Leeson MC, Sandler SJ.  2009.  UvrD303, a hyperhelicase mutant that antagonizes RecA-dependent SOS expression by a mechanism that depends on its C terminus.. J Bacteriol. 191(5):1429-38.

Segura D, Mahadevan R, Juárez K, Lovley DR.  2008.  Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.. PLoS Comput Biol. 4(2):e36.

Feinberg LF, Srikanth R, Vachet RW, Holden JF.  2008.  Constraints on anaerobic respiration in the hyperthermophilic Archaea Pyrobaculum islandicum and Pyrobaculum aerophilum.. Appl Environ Microbiol. 74(2):396-402.

Long J E, Renzette N, Centore RC, Sandler SJ.  2008.  Differential requirements of two recA mutants for constitutive SOS expression in Escherichia coli K-12.. PLoS One. 3(12):e4100.

Esteve-Núñez A, Sosnik J, Visconti P, Lovley DR.  2008.  Fluorescent properties of c-type cytochromes reveal their potential role as an extracytoplasmic electron sink in Geobacter sulfurreducens.. Environ Microbiol. 10(2):497-505.

Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo JM, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR.  2008.  Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.. Microbiology. 154(Pt 5):1422-35.

Haveman SA, Didonato RJ, Villanueva L, Shelobolina ES, Postier BL, Xu B, Liu A, Lovley DR.  2008.  Genome-wide gene expression patterns and growth requirements suggest that Pelobacter carbinolicus reduces Fe(III) indirectly via sulfide production.. Appl Environ Microbiol. 74(14):4277-84.

Izallalen M, Mahadevan R, Burgard A, Postier B, DiDonato R, Sun J, Schilling CH, Lovley DR.  2008.  Geobacter sulfurreducens strain engineered for increased rates of respiration.. Metab Eng. 10(5):267-75.

Shelobolina ES, Vrionis HA, Findlay RH, Lovley DR.  2008.  Geobacter uraniireducens sp. nov., isolated from subsurface sediment undergoing uranium bioremediation.. Int J Syst Evol Microbiol. 58(Pt 5):1075-8.

Strycharz SM, Woodard TL, Johnson JP, Nevin KP, Sanford RA, Löffler FE, Lovley DR.  2008.  Graphite electrode as a sole electron donor for reductive dechlorination of tetrachlorethene by Geobacter lovleyi.. Appl Environ Microbiol. 74(19):5943-7.

Kashefi K, Shelobolina ES, Elliott CW, Lovley DR.  2008.  Growth of thermophilic and hyperthermophilic Fe(III)-reducing microorganisms on a ferruginous smectite as the sole electron acceptor.. Appl Environ Microbiol. 74(1):251-8.

Al-Badri ZM, Som A, Lyon S, Nelson CF, Nüsslein K, Tew GN.  2008.  Investigating the effect of increasing charge density on the hemolytic activity of synthetic antimicrobial polymers.. Biomacromolecules. 9(10):2805-10.

Ding Y-HR, Hixson KK, Aklujkar MA, Lipton MS, Smith RD, Lovley DR, Mester T.  2008.  Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor.. Biochim Biophys Acta. 1784(12):1935-41.

Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL.  2008.  Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules.. Genome Biol. 9(8):R121.

Villanueva L, Haveman SA, Summers ZM, Lovley DR.  2008.  Quantification of Desulfovibrio vulgaris dissimilatory sulfite reductase gene expression during electron donor- and electron acceptor-limited growth.. Appl Environ Microbiol. 74(18):5850-3.

Chin K-J, Sharma ML, Russell LA, O'Neill KR, Lovley DR.  2008.  Quantifying expression of a dissimilatory (bi)sulfite reductase gene in petroleum-contaminated marine harbor sediments.. Microb Ecol. 55(3):489-99.

Gruenig MC, Renzette N, Long E, Chitteni-Pattu S, Inman RB, Cox MM, Sandler SJ.  2008.  RecA-mediated SOS induction requires an extended filament conformation but no ATP hydrolysis.. Mol Microbiol. 69(5):1165-79.

Renzette N, Sandler SJ.  2008.  Requirements for ATP binding and hydrolysis in RecA function in Escherichia coli.. Mol Microbiol. 67(6):1347-59.

Centore RC, Lestini R, Sandler SJ.  2008.  XthA (Exonuclease III) regulates loading of RecA onto DNA substrates in log phase Escherichia coli cells.. Mol Microbiol. 67(1):88-101.

Renzette N, Gumlaw N, Sandler SJ.  2007.  DinI and RecX modulate RecA-DNA structures in Escherichia coli K-12.. Mol Microbiol. 63(1):103-15.

Shelobolina ES, Nevin KP, Blakeney-Hayward JD, Johnsen CV, Plaia TW, Krader P, Woodard T, Holmes DE, Vanpraagh C G, Lovley DR.  2007.  Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.. Int J Syst Evol Microbiol. 57(Pt 1):126-35.

Lopper M, Boonsombat R, Sandler SJ, Keck JL.  2007.  A hand-off mechanism for primosome assembly in replication restart.. Mol Cell. 26(6):781-93.

Shelobolina ES, Coppi MV, Korenevsky AA, DiDonato LN, Sullivan SA, Konishi H, Xu H, Leang C, Butler JE, Kim B-C et al..  2007.  Importance of c-Type cytochromes for U(VI) reduction by Geobacter sulfurreducens.. BMC Microbiol. 7:16.

Figaji AA, Fieggen AG, Sandler SJI, Argent AC, Le Roux PD, Peter JC.  2007.  Intracranial pressure and cerebral oxygenation changes after decompressive craniectomy in a child with traumatic brain swelling.. Childs Nerv Syst. 23(11):1331-5.

Webley WC, Salva PS, Andrzejewski C, Cirino F, West CA, Tilahun Y, Stuart ES.  2007.  Notice of duplicate publication.. Am J Respir Crit Care Med. 175(1):94.

Mayrose I, Penn O, Erez E, Rubinstein ND, Shlomi T, Freund N T, Bublil EM, Ruppin E, Sharan R, Gershoni JM et al..  2007.  Pepitope: epitope mapping from affinity-selected peptides.. Bioinformatics. 23(23):3244-6.

Stern A, Doron-Faigenboim A, Erez E, Martz E, Bacharach E, Pupko T.  2007.  Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach.. Nucleic Acids Res. 35(Web Server issue):W506-11.

Centore RC, Sandler SJ.  2007.  UvrD limits the number and intensities of RecA-green fluorescent protein structures in Escherichia coli K-12.. J Bacteriol. 189(7):2915-20.

Mahadevan R, Bond DR, Butler JE, Esteve-Nuñez A, Coppi MV, Palsson BO, Schilling CH, Lovley DR.  2006.  Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.. Appl Environ Microbiol. 72(2):1558-68.

Cirino F, Webley WC, West C, Croteau NL, Andrzejewski C, Stuart ES.  2006.  Detection of Chlamydia in the peripheral blood cells of normal donors using in vitro culture, immunofluorescence microscopy and flow cytometry techniques.. BMC Infect Dis. 6:23.

Butler JE, Glaven RH, Esteve-Núñez A, Núñez C, Shelobolina ES, Bond DR, Lovley DR.  2006.  Genetic characterization of a single bifunctional enzyme for fumarate reduction and succinate oxidation in Geobacter sulfurreducens and engineering of fumarate reduction in Geobacter metallireducens.. J Bacteriol. 188(2):450-5.

Boonsombat R, Yeh S-P, Milne A, Sandler SJ.  2006.  A novel dnaC mutation that suppresses priB rep mutant phenotypes in Escherichia coli K-12.. Mol Microbiol. 60(4):973-83.

Morita YS, Sena CBC, Waller RF, Kurokawa K, Sernee FM, Nakatani F, Haites RE, Billman-Jacobe H, McConville MJ, Maeda Y et al..  2006.  PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of phosphatidylinositol mannoside in mycobacteria.. J Biol Chem. 281(35):25143-55.

Ding Y-HR, Hixson KK, Giometti CS, Stanley A, Esteve-Núñez A, Khare T, Tollaksen SL, Zhu W, Adkins JN, Lipton MS et al..  2006.  The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions.. Biochim Biophys Acta. 1764(7):1198-206.

DiDonato LN, Sullivan SA, Methé BA, Nevin KP, England R, Lovley DR.  2006.  Role of RelGsu in stress response and Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 188(24):8469-78.

Leang C, Adams LA, Chin K-J, Nevin KP, Methé BA, Webster J, Sharma ML, Lovley DR.  2005.  Adaptation to disruption of the electron transfer pathway for Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 187(17):5918-26.

Webley WC, Salva PS, Andrzejewski C, Cirino F, West CA, Tilahun Y, Stuart ES.  2005.  The bronchial lavage of pediatric patients with asthma contains infectious Chlamydia.. Am J Respir Crit Care Med. 171(10):1083-8.

Renzette N, Gumlaw N, Nordman JT, Krieger M, Yeh S-P, Long E, Centore R, Boonsombat R, Sandler SJ.  2005.  Localization of RecA in Escherichia coli K-12 using RecA-GFP.. Mol Microbiol. 57(4):1074-85.

Chang Y-J, Long PE, Geyer R, Peacock AD, Resch CT, Sublette K, Pfiffner S, Smithgall A, Anderson RT, Vrionis HA et al..  2005.  Microbial incorporation of 13C-labeled acetate at the field scale: detection of microbes responsible for reduction of U(VI).. Environ Sci Technol. 39(23):9039-48.

Afkar E, Reguera G, Schiffer M, Lovley DR.  2005.  A novel Geobacteraceae-specific outer membrane protein J (OmpJ) is essential for electron transport to Fe(III) and Mn(IV) oxides in Geobacter sulfurreducens.. BMC Microbiol. 5:41.

Kang J Y, Hong Y, Ashida H, Shishioh N, Murakami Y, Morita YS, Maeda Y, Kinoshita T.  2005.  PIG-V involved in transferring the second mannose in glycosylphosphatidylinositol.. J Biol Chem. 280(10):9489-97.

Sandler SJ.  2005.  Requirements for replication restart proteins during constitutive stable DNA replication in Escherichia coli K-12.. Genetics. 169(4):1799-806.

Stout LM, Nüsslein K.  2005.  Shifts in rhizoplane communities of aquatic plants after cadmium exposure.. Appl Environ Microbiol. 71(5):2484-92.

Hinds T, Sandler SJ.  2004.  Allele specific synthetic lethality between priC and dnaAts alleles at the permissive temperature of 30 degrees C in E. coli K-12.. BMC Microbiol. 4:47.

Webley WC, Norkin LC, Stuart ES.  2004.  Caveolin-2 associates with intracellular chlamydial inclusions independently of caveolin-1.. BMC Infect Dis. 4:23.

Webley WC, Vora GJ, Stuart ES.  2004.  Cell surface display of the chlamydial glycolipid exoantigen (GLXA) demonstrated by antibody-dependent complement-mediated cytotoxicity.. Curr Microbiol. 49(1):13-21.

McCool JD, Ford CC, Sandler SJ.  2004.  A dnaT mutant with phenotypes similar to those of a priA2::kan mutant in Escherichia coli K-12.. Genetics. 167(2):569-78.

de la Salmonière Y-OLuc Goguet, Kim CC, Tsolaki AG, Pym AS, Siegrist MS, Small PM.  2004.  High-throughput method for detecting genomic-deletion polymorphisms.. J Clin Microbiol. 42(7):2913-8.

Shelobolina ES, Sullivan SA, O'Neill KR, Nevin KP, Lovley DR.  2004.  Isolation, characterization, and U(VI)-reducing potential of a facultatively anaerobic, acid-resistant Bacterium from Low-pH, nitrate- and U(VI)-contaminated subsurface sediment and description of Salmonella subterranea sp. nov.. Appl Environ Microbiol. 70(5):2959-65.

McCool JD, Long E, Petrosino JF, Sandler HA, Rosenberg SM, Sandler SJ.  2004.  Measurement of SOS expression in individual Escherichia coli K-12 cells using fluorescence microscopy.. Mol Microbiol. 53(5):1343-57.

Griffith KL, Shah IM, Wolf RE.  2004.  Proteolytic degradation of Escherichia coli transcription activators SoxS and MarA as the mechanism for reversing the induction of the superoxide (SoxRS) and multiple antibiotic resistance (Mar) regulons.. Mol Microbiol. 51(6):1801-16.

Gov Y, Borovok I, Korem M, Singh VK, Jayaswal RK, Wilkinson BJ, Rich SM, Balaban N.  2004.  Quorum sensing in Staphylococci is regulated via phosphorylation of three conserved histidine residues.. J Biol Chem. 279(15):14665-72.

Lloyd JR, Leang C, Hodges Myerson AL, Coppi MV, Cuifo S, Methe B, Sandler SJ, Lovley DR.  2003.  Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens.. Biochem J. 369(Pt 1):153-61.

Cummings DE, Snoeyenbos-West OL, Newby DT, Niggemyer AM, Lovley DR, Achenbach LA, Rosenzweig RF.  2003.  Diversity of Geobacteraceae species inhabiting metal-polluted freshwater lake sediments ascertained by 16S rDNA analyses.. Microb Ecol. 46(2):257-69.

Methé BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ et al..  2003.  Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.. Science. 302(5652):1967-9.

Stuart ES, Webley WC, Norkin LC.  2003.  Lipid rafts, caveolae, caveolin-1, and entry by Chlamydiae into host cells.. Exp Cell Res. 287(1):67-78.

Saxowsky TT, Choudhary G, Klingbeil MM, Englund PT.  2003.  Trypanosoma brucei has two distinct mitochondrial DNA polymerase beta enzymes.. J Biol Chem. 278(49):49095-101.

Griffith KL, Shah IM, Myers TE, O'Neill MC, Wolf RE.  2002.  Evidence for "pre-recruitment" as a new mechanism of transcription activation in Escherichia coli: the large excess of SoxS binding sites per cell relative to the number of SoxS molecules per cell.. Biochem Biophys Res Commun. 291(4):979-86.

Tender LM, Reimers CE, Stecher HA, Holmes DE, Bond DR, Lowy DA, Pilobello K, Fertig SJ, Lovley DR.  2002.  Harnessing microbially generated power on the seafloor.. Nat Biotechnol. 20(8):821-5.

Rich SM, Sawyer SA, Barbour AG.  2001.  Antigen polymorphism in Borrelia hermsii, a clonal pathogenic bacterium.. Proc Natl Acad Sci U S A. 98(26):15038-43.

Stults JR, Snoeyenbos-West O, Methe B, Lovley DR, Chandler DP.  2001.  Application of the 5' fluorogenic exonuclease assay (TaqMan) for quantitative ribosomal DNA and rRNA analysis in sediments.. Appl Environ Microbiol. 67(6):2781-9.

Norkin LC, Wolfrom SA, Stuart ES.  2001.  Association of caveolin with Chlamydia trachomatis inclusions at early and late stages of infection.. Exp Cell Res. 266(2):229-38.

Coppi MV, Leang C, Sandler SJ, Lovley DR.  2001.  Development of a genetic system for Geobacter sulfurreducens.. Appl Environ Microbiol. 67(7):3180-7.

Holden JF, Takai K, Summit M, Bolton S, Zyskowski J, Baross JA.  2001.  Diversity among three novel groups of hyperthermophilic deep-sea Thermococcus species from three sites in the northeastern Pacific Ocean.. FEMS Microbiol Ecol. 36(1):51-60.

McCool JD, Sandler SJ.  2001.  Effects of mutations involving cell division, recombination, and chromosome dimer resolution on a priA2::kan mutant.. Proc Natl Acad Sci U S A. 98(15):8203-10.

Adams MW, Holden JF, Menon AL, Schut GJ, Grunden AM, Hou C, Hutchins AM, Jenney FE, Kim C, Ma K et al..  2001.  Key role for sulfur in peptide metabolism and in regulation of three hydrogenases in the hyperthermophilic archaeon Pyrococcus furiosus.. J Bacteriol. 183(2):716-24.

Rich SM, Armstrong PM, Smith RD, Telford SR.  2001.  Lone star tick-infecting borreliae are most closely related to the agent of bovine borreliosis.. J Clin Microbiol. 39(2):494-7.

Sandler SJ, McCool JD, Do TT, Johansen RU.  2001.  PriA mutations that affect PriA-PriC function during replication restart.. Mol Microbiol. 41(3):697-704.

Morris JC, Drew ME, Klingbeil MM, Motyka SA, Saxowsky TT, Wang Z, Englund PT.  2001.  Replication of kinetoplast DNA: an update for the new millennium.. Int J Parasitol. 31(5-6):453-8.

Snoeyenbos-West O, Van Praagh CG, Lovley DR.  2001.  Trichlorobacter thiogenes should be renamed as a Geobacter species.. Appl Environ Microbiol. 67(2):1020-2.

Klingbeil MM, Drew ME, Liu Y, Morris JC, Motyka SA, Saxowsky TT, Wang Z, Englund PT.  2001.  Unlocking the secrets of trypanosome kinetoplast DNA network replication.. Protist. 152(4):255-62.

Lloyd JR, Sole VA, Van Praagh CV, Lovley DR.  2000.  Direct and Fe(II)-mediated reduction of technetium by Fe(III)-reducing bacteria.. Appl Environ Microbiol. 66(9):3743-9.

Snoeyenbos-West OL, Nevin KP, Anderson RT, Lovley DR.  2000.  Enrichment of Geobacter Species in Response to Stimulation of Fe(III) Reduction in Sandy Aquifer Sediments.. Microb Ecol. 39(2):153-167.

Scherer TM, Fuller RC, Goodwin S, Lenz RW.  2000.  Enzymatic hydrolysis of oligomeric models of poly-3-hydroxybutyrate.. Biomacromolecules. 1(4):577-83.

Cox MM, Goodman MF, Kreuzer KN, Sherratt DJ, Sandler SJ, Marians KJ.  2000.  The importance of repairing stalled replication forks.. Nature. 404(6773):37-41.

Song JJ, Zhang S, Lenz RW, Goodwin S.  2000.  In vitro polymerization and copolymerization of 3-hydroxypropionyl-CoA with the PHB synthase from Ralstonia eutropha.. Biomacromolecules. 1(3):433-9.

Sandler SJ.  2000.  Multiple genetic pathways for restarting DNA replication forks in Escherichia coli K-12.. Genetics. 155(2):487-97.

Bazylinski DA, Dean AJ, Schüler D, Phillips EJ, Lovley DR.  2000.  N2-dependent growth and nitrogenase activity in the metal-metabolizing bacteria, Geobacter and Magnetospirillum species.. Environ Microbiol. 2(3):266-73.

Sandler SJ, Marians KJ.  2000.  Role of PriA in replication fork reactivation in Escherichia coli.. J Bacteriol. 182(1):9-13.

Sandler SJ, Hugenholtz P, Schleper C, DeLong EF, Pace NR, Clark AJ.  1999.  Diversity of radA genes from cultured and uncultured archaea: comparative analysis of putative RadA proteins and their use as a phylogenetic marker.. J Bacteriol. 181(3):907-15.

Sandler SJ, Marians KJ, Zavitz KH, Coutu J, Parent MA, Clark AJ.  1999.  dnaC mutations suppress defects in DNA replication- and recombination-associated functions in priB and priC double mutants in Escherichia coli K-12.. Mol Microbiol. 34(1):91-101.

Wood TI, Griffith KL, Fawcett WP, Jair KW, Schneider TD, Wolf RE.  1999.  Interdependence of the position and orientation of SoxS binding sites in the transcriptional activation of the class I subset of Escherichia coli superoxide-inducible promoters.. Mol Microbiol. 34(3):414-30.

Liu J, Xu L, Sandler SJ, Marians KJ.  1999.  Replication fork assembly at recombination intermediates is required for bacterial growth.. Proc Natl Acad Sci U S A. 96(7):3552-5.

Stolz JF, Ellis DJ, Blum JS, Ahmann D, Lovley DR, Oremland RS.  1999.  Sulfurospirillum barnesii sp. nov. and Sulfurospirillum arsenophilum sp. nov., new members of the Sulfurospirillum clade of the epsilon Proteobacteria.. Int J Syst Bacteriol. 49 Pt 3:1177-80.

Cord-Ruwisch R, Lovley DR, Schink B.  1998.  Growth of geobacter sulfurreducens with acetate in syntrophic cooperation with hydrogen-oxidizing anaerobic partners. Appl Environ Microbiol. 64(6):2232-6.

Seitz EM, Brockman JP, Sandler SJ, Clark AJ, Kowalczykowski SC.  1998.  RadA protein is an archaeal RecA protein homolog that catalyzes DNA strand exchange.. Genes Dev. 12(9):1248-53.

Brendel V, Brocchieri L, Sandler SJ, Clark AJ, Karlin S.  1997.  Evolutionary comparisons of RecA-like proteins across all major kingdoms of living organisms.. J Mol Evol. 44(5):528-41.

Rich SM, Rosenthal BM, Telford SR, Spielman A, Hartl DL, Ayala FJ.  1997.  Heterogeneity of the internal transcribed spacer (ITS-2) region within individual deer ticks.. Insect Mol Biol. 6(2):123-9.

Sandler SJ, Samra HS, Clark AJ.  1996.  Differential suppression of priA2::kan phenotypes in Escherichia coli K-12 by mutations in priA, lexA, and dnaC.. Genetics. 143(1):5-13.

Caccavo F, Coates JD, Rossello-Mora RA, Ludwig W, Schleifer KH, Lovley DR, McInerney MJ.  1996.  Geovibrio ferrireducens, a phylogenetically distinct dissimilatory Fe(III)-reducing bacterium.. Arch Microbiol. 165(6):370-6.

Klingbeil MM, Walker DJ, Arnette R, Sidawy E, Hayton K, Komuniecki PR, Komuniecki R.  1996.  Identification of a novel dihydrolipoyl dehydrogenase-binding protein in the pyruvate dehydrogenase complex of the anaerobic parasitic nematode, Ascaris suum.. J Biol Chem. 271(10):5451-7.

Armstrong PM, Rich SM, Smith RD, Hartl DL, Spielman A, Telford SR.  1996.  A new Borrelia infecting Lone Star ticks.. Lancet. 347(8993):67-8.

Sandler SJ.  1996.  Overlapping functions for recF and priA in cell viability and UV-inducible SOS expression are distinguished by dnaC809 in Escherichia coli K-12.. Mol Microbiol. 19(4):871-80.

Lonergan DJ, Jenter HL, Coates JD, Phillips EJ, Schmidt TM, Lovley DR.  1996.  Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria.. J Bacteriol. 178(8):2402-8.

Sandler SJ, Satin LH, Samra HS, Clark AJ.  1996.  recA-like genes from three archaean species with putative protein products similar to Rad51 and Dmc1 proteins of the yeast Saccharomyces cerevisiae.. Nucleic Acids Res. 24(11):2125-32.

Caporale DA, Rich SM, Spielman A, Telford SR, Kocher TD.  1995.  Discriminating between Ixodes ticks by means of mitochondrial DNA sequences.. Mol Phylogenet Evol. 4(4):361-5.

Rich SM, Caporale DA, Telford SR, Kocher TD, Hartl DL, Spielman A.  1995.  Distribution of the Ixodes ricinus-like ticks of eastern North America.. Proc Natl Acad Sci U S A. 92(14):6284-8.

Laverman AM, Blum JS, Schaefer JK, Phillips E, Lovley DR, Oremland RS.  1995.  Growth of Strain SES-3 with Arsenate and Other Diverse Electron Acceptors.. Appl Environ Microbiol. 61(10):3556-61.

Hegde S, Sandler SJ, Clark AJ, Madiraju MV.  1995.  recO and recR mutations delay induction of the SOS response in Escherichia coli.. Mol Gen Genet. 246(2):254-8.

Caccavo F, Lonergan DJ, Lovley DR, Davis M, Stolz JF, McInerney MJ.  1994.  Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism.. Appl Environ Microbiol. 60(10):3752-9.

Clark AJ, Sandler SJ.  1994.  Homologous genetic recombination: the pieces begin to fall into place.. Crit Rev Microbiol. 20(2):125-42.

Sandler SJ, Clark AJ.  1994.  Mutational analysis of sequences in the recF gene of Escherichia coli K-12 that affect expression.. J Bacteriol. 176(13):4011-6.

Sandler SJ, Clark AJ.  1994.  RecOR suppression of recF mutant phenotypes in Escherichia coli K-12.. J Bacteriol. 176(12):3661-72.

Sandler SJ.  1994.  Studies on the mechanism of reduction of UV-inducible sulAp expression by recF overexpression in Escherichia coli K-12.. Mol Gen Genet. 245(6):741-9.

Rand PW, Lacombe EH, Smith RP, Rich SM, Kilpatrick CW, Dragoni CA, Caporale D.  1993.  Competence of Peromyscus maniculatus (Rodentia: Cricetidae) as a reservoir host for Borrelia burgdorferi (Spirochaetares: Spirochaetaceae) in the wild.. J Med Entomol. 30(3):614-8.

Smith RP, Rand PW, Lacombe EH, Telford SR, Rich SM, Piesman J, Spielman A.  1993.  Norway rats as reservoir hosts for Lyme disease spirochetes on Monhegan Island, Maine.. J Infect Dis. 168(3):687-91.

Sandler SJ, Clark AJ.  1993.  Use of high and low level overexpression plasmids to test mutant alleles of the recF gene of Escherichia coli K-12 for partial activity.. Genetics. 135(3):643-54.

Giraldo-Gomez E, Goodwin S, Switzenbaum MS.  1992.  Influence of mass transfer limitations on determination of the half saturation constant for hydrogen uptake in a mixed-culture CH(4)-producing enrichment.. Biotechnol Bioeng. 40(7):768-76.

Sandler SJ, Chackerian B, Li JT, Clark AJ.  1992.  Sequence and complementation analysis of recF genes from Escherichia coli, Salmonella typhimurium, Pseudomonas putida and Bacillus subtilis: evidence for an essential phosphate binding loop.. Nucleic Acids Res. 20(4):839-45.

Sandler SJ, Clark AJ.  1990.  Factors affecting expression of the recF gene of Escherichia coli K-12.. Gene. 86(1):35-43.

Clark AJ, Sandler SJ, Willis DK, Chu CC, Blanar MA, Lovett ST.  1984.  Genes of the RecE and RecF pathways of conjugational recombination in Escherichia coli.. Cold Spring Harb Symp Quant Biol. 49:453-62.

Blanar MA, Sandler SJ, Armengod ME, Ream LW, Clark AJ.  1984.  Molecular analysis of the recF gene of Escherichia coli.. Proc Natl Acad Sci U S A. 81(15):4622-6.

Simonian MA, Nalbandian RM.  1975.  [Acid and alkaline denaturation of superoxide dismutase].. Biofizika. 20(5):783-7.

Silen W, Machen TE, Forte JG.  1975.  Acid-base balance in amphibian gastric mucosa.. Am J Physiol. 229(3):721-30.

Moroi K, Sato T.  1975.  Comparison between procaine and isocarboxazid metabolism in vitro by a liver microsomal amidase-esterase.. Biochem Pharmacol. 24(16):1517-21.

Bose KS, Sarma RH.  1975.  Delineation of the intimate details of the backbone conformation of pyridine nucleotide coenzymes in aqueous solution.. Biochem Biophys Res Commun. 66(4):1173-9.

Schmoldt A, Benthe HF, Haberland G.  1975.  Digitoxin metabolism by rat liver microsomes.. Biochem Pharmacol. 24(17):1639-41.

Huijbregts LA, Schreurs M.  1975.  Evaluation of amplitude and frequency changes of miniature potentials with a poor signal-to-noise ratio.. Comp Biochem Physiol C. 52(1):11-6.

Kröger H, Donner I, Skiello G.  1975.  Influence of a new virostatic compound on the induction of enzymes in rat liver.. Arzneimittelforschung. 25(9):1426-9.

Sinelnikova EM, Dvoretskova TV, Kagan ZS.  1975.  [Intermediate plateaux in kinetics of the reaction catalyzed by biodegradative L-threonine dehydratase from Escherichia coli].. Biokhimiia. 40(3):645-51.

Anderson TR, Slotkin TA.  1975.  Maturation of the adrenal medulla--IV. Effects of morphine.. Biochem Pharmacol. 24(16):1469-74.

Jahre JA, Grace WJ, Greenbaum DM, Sarg MJ.  1975.  Medical approach to the hypotensive patient and the patient in shock.. Heart Lung. 4(4):577-87.

Smith RJ, Bryant RG.  1975.  Metal substitutions incarbonic anhydrase: a halide ion probe study.. Biochem Biophys Res Commun. 66(4):1281-6.

Scherberger RR, Kaess H, Brückner S.  1975.  [Studies on the action of an anticholinergic agent in combination with a tranquilizer on gastric juice secretion in man].. Arzneimittelforschung. 25(9):1460-3.