Zhou E, Li F, Zhang D, Xu D, Li Z, Jia R, Jin Y, Song H, Li H, Wang Q et al..  2022.  Direct microbial electron uptake as a mechanism for stainless steel corrosion in aerobic environments.. Water Res. 219:118553.

Lovley DR, Holmes DE.  2022.  Electromicrobiology: the ecophysiology of phylogenetically diverse electroactive microorganisms.. Nat Rev Microbiol. 20(1):5-19.

Zhou J, Holmes DE, Tang H-Y, Lovley DR.  2021.  Correlation of Key Physiological Properties of  Isolates with Environment of Origin.. Appl Environ Microbiol. 87(13):e0073121.

Liang D, Liu X, Woodard TL, Holmes DE, Smith JA, Nevin KP, Feng Y, Lovley DR.  2021.  Extracellular Electron Exchange Capabilities of  and .. Environ Sci Technol. 55(23):16195-16203.

Holmes DE, Zhou J, Ueki T, Woodard T, Lovley DR.  2021.  Mechanisms for Electron Uptake by Methanosarcina acetivorans during Direct Interspecies Electron Transfer.. mBio. 12(5):e0234421.

Tang H-Y, Yang C, Ueki T, Pittman CC, Xu D, Woodard TL, Holmes DE, Gu T, Wang F, Lovley DR.  2021.  Stainless steel corrosion via direct iron-to-microbe electron transfer by Geobacter species.. ISME J. 15(10):3084-3093.

Brown AR, Gordon RA, Hyland SN, M Siegrist S, Grimes CL.  2020.  Chemical Biology Tools for Examining the Bacterial Cell Wall.. Cell Chem Biol. 27(8):1052-1062.

Lovley DR, Holmes DE.  2020.  Protein Nanowires: the Electrification of the Microbial World and Maybe Our Own.. J Bacteriol. 202(20)

Walker DJF, Nevin KP, Holmes DE, Rotaru A-E, Ward JE, Woodard TL, Zhu J, Ueki T, Nonnenmann SS, McInerney MJ et al..  2020.  Syntrophus conductive pili demonstrate that common hydrogen-donating syntrophs can have a direct electron transfer option.. ISME J. 14(3):837-846.

Walker DJF, Martz E, Holmes DE, Zhou Z, Nonnenmann SS, Lovley DR.  2019.  The Archaellum of Methanospirillum hungatei Is Electrically Conductive.. mBio. 10(2)

Fiolek TJ, Banahene N, Kavunja HW, Holmes NJ, Rylski AK, Pohane AArunrao, M Siegrist S, Swarts BM.  2019.  Engineering the Mycomembrane of Live Mycobacteria with an Expanded Set of Trehalose Monomycolate Analogues.. Chembiochem. 20(10):1282-1291.

Tang H-Y, Holmes DE, Ueki T, Palacios PA, Lovley DR.  2019.  Iron Corrosion via Direct Metal-Microbe Electron Transfer.. mBio. 10(3)

Holmes DE, Ueki T, Tang H-Y, Zhou J, Smith JA, Chaput G, Lovley DR.  2019.  A Membrane-Bound Cytochrome Enables  To Conserve Energy from Extracellular Electron Transfer.. mBio. 10(4)

Ueki T, Nevin KP, Woodard TL, Aklujkar MA, Holmes DE, Lovley DR.  2018.  Construction of a  Strain With Exceptional Growth on Cathodes.. Front Microbiol. 9:1512.

Walker DJf, Adhikari RY, Holmes DE, Ward JE, Woodard TL, Nevin KP, Lovley DR.  2018.  Electrically conductive pili from pilin genes of phylogenetically diverse microorganisms.. ISME J. 12(1):48-58.

Holmes DE, Rotaru A-E, Ueki T, Shrestha PM, Ferry JG, Lovley DR.  2018.  Electron and Proton Flux for Carbon Dioxide Reduction in  During Direct Interspecies Electron Transfer.. Front Microbiol. 9:3109.

Holmes DE, Orelana R, Giloteaux L, Wang L-Y, Shrestha P, Williams K, Lovley DR, Rotaru A-E.  2018.  Potential for Methanosarcina to Contribute to Uranium Reduction during Acetate-Promoted Groundwater Bioremediation.. Microb Ecol. 76(3):660-667.

Hayashi JM, Richardson K, Melzer ES, Sandler SJ, Aldridge BB, M. Siegrist S, Morita YS.  2018.  Stress-Induced Reorganization of the Mycobacterial Membrane Domain. {mBio}. 9

Holmes DE, Shrestha PM, Walker DJF, Dang Y, Nevin KP, Woodard TL, Lovley DR.  2017.  Metatranscriptomic Evidence for Direct Interspecies Electron Transfer between Geobacter and Methanothrix Species in Methanogenic Rice Paddy Soils.. Appl Environ Microbiol. 83(9)

Holmes DE, Dang Y, Walker DJF, Lovley DR.  2016.  The electrically conductive pili of pecies are a recently evolved feature for extracellular electron transfer.. Microb Genom. 2(8):e000072.

Dang Y, Holmes DE, Zhao Z, Woodard TL, Zhang Y, Sun D, Wang L-Y, Nevin KP, Lovley DR.  2016.  Enhancing anaerobic digestion of complex organic waste with carbon-based conductive materials.. Bioresour Technol. 220:516-522.

Stewart LC, Llewellyn JG, Butterfield DA, Lilley MD, Holden JF.  2016.  Hydrogen and thiosulfate limits for growth of a thermophilic, autotrophic Desulfurobacterium species from a deep-sea hydrothermal vent.. Environ Microbiol Rep. 8(2):196-200.

Hensley SA, Moreira E, Holden JF.  2016.  Hydrogen Production and Enzyme Activities in the Hyperthermophile Thermococcus paralvinellae Grown on Maltose, Tryptone, and Agricultural Waste.. Front Microbiol. 7:167.

Zhao Z, Zhang Y, Holmes DE, Dang Y, Woodard TL, Nevin KP, Lovley DR.  2016.  Potential enhancement of direct interspecies electron transfer for syntrophic metabolism of propionate and butyrate with biochar in up-flow anaerobic sludge blanket reactors.. Bioresour Technol. 209:148-56.

Kim Y-T, Jung J-H, Stewart LC, Kwon S-W, Holden JF, Park C-S.  2015.  Complete genome sequence of the hyperthermophilic methanogen Methanocaldococcus bathoardescens JH146(T) isolated from the basalt subseafloor.. Mar Genomics. 24 Pt 3:229-30.

Holmes DE, Giloteaux L, Chaurasia AK, Williams KH, Luef B, Wilkins MJ, Wrighton KC, Thompson CA, Comolli LR, Lovley DR.  2015.  Evidence of Geobacter-associated phage in a uranium-contaminated aquifer.. ISME J. 9(2):333-46.

Wang DT, Gruen DS, Lollar BSherwood, Hinrichs K-U, Stewart LC, Holden JF, Hristov AN, Pohlman JW, Morrill PL, Könneke M et al..  2015.  Methane cycling. Nonequilibrium clumped isotope signals in microbial methane.. Science. 348(6233):428-31.

Stewart LC, Jung J-H, Kim Y-T, Kwon S-W, Park C-S, Holden JF.  2015.  Methanocaldococcus bathoardescens sp. nov., a hyperthermophilic methanogen isolated from a volcanically active deep-sea hydrothermal vent.. Int J Syst Evol Microbiol. 65(Pt 4):1280-3.

Boguslawski KM, Hill PA, Griffith KL.  2015.  Novel mechanisms of controlling the activities of the transcription factors Spo0A and ComA by the plasmid-encoded quorum sensing regulators Rap60-Phr60 in Bacillus subtilis.. Mol Microbiol. 

Sang H, Hulvey J, Popko JT, Lopes J, Swaminathan A, Chang T, Jung G.  2015.  A pleiotropic drug resistance transporter is involved in reduced sensitivity to multiple fungicide classes in Sclerotinia homoeocarpa (F.T. Bennett).. Mol Plant Pathol. 16(3):251-61.

Holmes DE, Nevin KP, Snoeyenbos-West OL, Woodard TL, Strickland JN, Lovley DR.  2015.  Protozoan grazing reduces the current output of microbial fuel cells.. Bioresour Technol. 193:8-14.

Muller M, Hutin S, Marigold O, Li KH, Burlingame A, Glaunsinger BA.  2015.  A Ribonucleoprotein Complex Protects the Interleukin-6 mRNA from Degradation by Distinct Herpesviral Endonucleases. PLOS Pathogens. 11:e1004899.

Jeon E-J, Jung J-H, Seo D-H, Jung D-H, Holden JF, Park C-S.  2014.  Bioinformatic and biochemical analysis of a novel maltose-forming ?-amylase of the GH57 family in the hyperthermophilic archaeon Thermococcus sp. CL1.. Enzyme Microb Technol. 60:9-15.

Jung J-H, Kim Y-T, Jeon E-J, Seo D-H, Hensley SA, Holden JF, Lee J-H, Park C-S.  2014.  Complete genome sequence of hyperthermophilic archaeon Thermococcus sp. ES1.. J Biotechnol. 174C:14-15.

Shanmugam R, Aklujkar M, Schäfer M, Reinhardt R, Nickel O, Reuter G, Lovley DR, Ehrenhofer-Murray A, Nellen W, Ankri S et al..  2014.  The Dnmt2 RNA methyltransferase homolog of Geobacter sulfurreducens specifically methylates tRNA-Glu.. Nucleic Acids Res. 42(10):6487-96.

Jung J-H, Seo D-H, Holden JF, Park C-S.  2014.  Identification and Characterization of an Archaeal Kojibiose Catabolic Pathway in the Hyperthermophilic Pyrococcus sp. Strain ST04.. J Bacteriol. 196(5):1122-31.

T Lin J, Breves EA, Dyar MD, Eecke HCVer, Jamieson JW, Holden JF.  2014.  Magnetite formation from ferrihydrite by hyperthermophilic archaea from Endeavour Segment, Juan de Fuca Ridge hydrothermal vent chimneys.. Geobiology. 12(3):200-11.

Jung J-H, Seo D-H, Holden JF, Park C-S.  2014.  Maltose-forming ?-amylase from the hyperthermophilic archaeon Pyrococcus sp. ST04.. Appl Microbiol Biotechnol. 98(5):2121-31.

Holmes DE, Giloteaux L, Orellana R, Williams KH, Robbins MJ, Lovley DR.  2014.  Methane production from protozoan endosymbionts following stimulation of microbial metabolism within subsurface sediments.. Front Microbiol. 5:366.

Orellana R, Hixson KK, Murphy S, Mester T, Sharma ML, Lipton MS, Lovley DR.  2014.  Proteome of Geobacter sulfurreducens in the presence of U(VI).. Microbiology (Reading). 160(Pt 12):2607-2617.

Park K-H, Jung J-H, Park S-G, Lee M-E, Holden JF, Park C-S, Woo E-J.  2014.  Structural features underlying the selective cleavage of a novel exo-type maltose-forming amylase from Pyrococcus sp. ST04.. Acta Crystallogr D Biol Crystallogr. 70(Pt 6):1659-68.

Hensley SA, Jung J-H, Park C-S, Holden JF.  2014.  Thermococcus paralvinellae sp. nov. and Thermococcus cleftensis sp. nov. of hyperthermophilic heterotrophs from deep-sea hydrothermal vents.. Int J Syst Evol Microbiol. 64(Pt 11):3655-9.

DeAngelis KM, Chivian D, Fortney J, Simmons BA, Hazen TC, Silver WL.  2013.  Changes in microbial dynamics during long-term decomposition in tropical forests.. Soil Biology and Biochemistry. 66:60-68.

Giloteaux L, Holmes DE, Williams KH, Wrighton KC, Wilkins MJ, Montgomery AP, Smith JA, Orellana R, Thompson CA, Roper TJ et al..  2013.  Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation.. ISME J. 7(2):370-83.

Rodrigues JLM, Pellizari VH, Mueller R, Baek K, Jesus Eda C, Paula FS, Mirza B, Hamaoui GS, Tsai SMui, Feigl B et al..  2013.  Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities.. Proc Natl Acad Sci U S A. 110(3):988-93.

Fukuda T, Matsumura T, Ato M, Hamasaki M, Nishiuchi Y, Murakami Y, Maeda Y, Yoshimori T, Matsumoto S, Kobayashi K et al..  2013.  Critical roles for lipomannan and lipoarabinomannan in cell wall integrity of mycobacteria and pathogenesis of tuberculosis.. MBio. 4(1)

Holmes DE, Giloteaux L, Williams KH, Wrighton KC, Wilkins MJ, Thompson CA, Roper TJ, Long PE, Lovley DR.  2013.  Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater.. ISME J. 7(7):1286-98.

Williams KH, Wilkins MJ, A N'Guessan L, Arey B, Dodova E, Dohnalkova A, Holmes D, Lovley DR, Long PE.  2013.  Field evidence of selenium bioreduction in a uranium-contaminated aquifer.. Environ Microbiol Rep. 5(3):444-52.

Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LAnn, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR et al..  2013.  Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.. PLoS One. 8(3):e57819.

Ver Eecke HC, Akerman NH, Huber JA, Butterfield DA, Holden JF.  2013.  Growth kinetics and energetics of a deep-sea hyperthermophilic methanogen under varying environmental conditions.. Environ Microbiol Rep. 5(5):665-71.

Deangelis KM, D'haeseleer P, Chivian D, Simmons B, Arkin AP, Mavromatis K, Malfatti S, Tringe S, Hazen TC.  2013.  Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.. Stand Genomic Sci. 7(3):382-98.

Holmes DE, Giloteaux L, Barlett M, Chavan MA, Smith JA, Williams KH, Wilkins M, Long P, Lovley DR.  2013.  Molecular analysis of the in situ growth rates of subsurface Geobacter species.. Appl Environ Microbiol. 79(5):1646-53.

Lee J-E, Kim I-H, Jung J-H, Seo D-H, Kang S-G, Holden JF, Cha J, Park C-S.  2013.  Molecular cloning and enzymatic characterization of cyclomaltodextrinase from hyperthermophilic archaeon Thermococcus sp. CL1.. J Microbiol Biotechnol. 23(8):1060-9.

Hatzios SK, Baer CE, Rustad TR, M Siegrist S, Pang JM, Ortega C, Alber T, Grundner C, Sherman DR, Bertozzi CR.  2013.  Osmosensory signaling in Mycobacterium tuberculosis mediated by a eukaryotic-like Ser/Thr protein kinase.. Proc Natl Acad Sci U S A. 110(52):E5069-77.

Deangelis KM, Fortney JL, Borglin S, Silver WL, Simmons BA, Hazen TC.  2012.  Anaerobic decomposition of switchgrass by tropical soil-derived feedstock-adapted consortia.. MBio. 3(1)

Borglin S, Joyner D, Deangelis KM, Khudyakov J, D'haeseleer P, Joachimiak MP, Hazen T.  2012.  Application of phenotypic microarrays to environmental microbiology.. Curr Opin Biotechnol. 23(1):41-8.

McKeever R, Sheppard D, Nüsslein K, Baek K-H, Rieber K, Ergas SJ, Forbes R, Hilyard M, Park C.  2012.  Biodegradation of ethylene dibromide (1,2-dibromoethane [EDB]) in microcosms simulating in situ and biostimulated conditions.. J Hazard Mater. 209-210:92-8.

Neveu G, Cassonnet P, Vidalain P-O, Rolloy C, Mendoza J, Jones L, Tangy F, Muller M, Demeret C, Tafforeau L et al..  2012.  Comparative analysis of virus?host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. Methods. 58:349?359.

Jung J-H, Lee J-H, Holden JF, Seo D-H, Shin H, Kim H-Y, Kim W, Ryu S, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge.. J Bacteriol. 194(16):4434-5.

Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.

Aklujkar M, Haveman SA, DiDonato R, Chertkov O, Han CS, Land ML, Brown P, Lovley DR.  2012.  The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.. BMC Genomics. 13:690.

Holmes DE, Risso C, Smith JA, Lovley DR.  2012.  Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus.. ISME J. 6(1):146-57.

Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP.  2012.  Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus.. Proc Natl Acad Sci U S A. 109(32):E2173-82.

Ver Eecke HC, Butterfield DA, Huber JA, Lilley MD, Olson EJ, Roe KK, Evans LJ, Merkel AY, Cantin HV, Holden JF.  2012.  Hydrogen-limited growth of hyperthermophilic methanogens at deep-sea hydrothermal vents.. Proc Natl Acad Sci U S A. 109(34):13674-9.

Summers ZM, Ueki T, Ismail W, Haveman SA, Lovley DR.  2012.  Laboratory evolution of Geobacter sulfurreducens for enhanced growth on lactate via a single-base-pair substitution in a transcriptional regulator.. ISME J. 6(5):975-83.

Liang Y, Van Nostrand JD, N'guessan LA, Peacock AD, Deng Y, Long PE, Resch TC, Wu L, He Z, Li G et al..  2012.  Microbial functional gene diversity with a shift of subsurface redox conditions during In Situ uranium reduction.. Appl Environ Microbiol. 78(8):2966-72.

Jang S, Sandler SJ, Harshey RM.  2012.  Mu insertions are repaired by the double-strand break repair pathway of Escherichia coli.. PLoS Genet. 8(4):e1002642.

Swarts BM, Holsclaw CM, Jewett JC, Alber M, Fox DM, M Siegrist S, Leary JA, Kalscheuer R, Bertozzi CR.  2012.  Probing the mycobacterial trehalome with bioorthogonal chemistry.. J Am Chem Soc. 134(39):16123-6.

Burand JP, Hunter WB.  2012.  RNAi: Future in insect management.. J Invertebr Pathol. 

He Y, Swaminathan A, Lopes JM.  2012.  Transcription regulation of the Saccharomyces cerevisiae PHO5 gene by the Ino2p and Ino4p basic helix-loop-helix proteins.. Mol Microbiol. 83(2):395-407.

Holmes DE, Risso C, Smith JA, Lovley DR.  2011.  Anaerobic oxidation of benzene by the hyperthermophilic archaeon Ferroglobus placidus.. Appl Environ Microbiol. 77(17):5926-33.

Deangelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC.  2011.  Characterization of trapped lignin-degrading microbes in tropical forest soil.. PLoS One. 6(4):e19306.

Deangelis KM, D'haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport K W, Goodwin L et al..  2011.  Complete genome sequence of "Enterobacter lignolyticus" SCF1.. Stand Genomic Sci. 5(1):69-85.

Nevin KP, Hensley SA, Franks AE, Summers ZM, Ou J, Woodard TL, Snoeyenbos-West OL, Lovley DR.  2011.  Electrosynthesis of organic compounds from carbon dioxide is catalyzed by a diversity of acetogenic microorganisms.. Appl Environ Microbiol. 77(9):2882-6.

Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru A-E et al..  2011.  Geobacter: the microbe electric's physiology, ecology, and practical applications.. Adv Microb Physiol. 59:1-100.

Deangelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME et al..  2011.  PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.. Appl Environ Microbiol. 77(18):6313-22.

Oslowski DM, Jung J-H, Seo D-H, Park C-S, Holden JF.  2011.  Production of hydrogen from ?-1,4- and ?-1,4-linked saccharides by marine hyperthermophilic Archaea.. Appl Environ Microbiol. 77(10):3169-73.

Prilusky J, Hodis E, Canner D, Decatur WA, Oberholser K, Martz E, Berchanski A, Harel M, Sussman JL.  2011.  Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.. J Struct Biol. 175(2):244-52.

Webley WC, Hahn DL.  2011.  Respiratory Chlamydophyla pneumoniae resides primarily in the lower airway.. Eur Respir J. 38(4):994-5;authorreply995.

Callister SJ, Wilkins MJ, Nicora CD, Williams KH, Banfield JF, VerBerkmoes NC, Hettich RL, N'Guessan L, Mouser PJ, Elifantz H et al..  2010.  Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles.. Environ Sci Technol. 44(23):8897-903.

Sun J, Haveman SA, Bui O, Fahland TR, Lovley DR.  2010.  Constraint-based modeling analysis of the metabolism of two Pelobacter species.. BMC Syst Biol. 4:174.

Elifantz H, N'guessan LA, Mouser PJ, Williams KH, Wilkins MJ, Risso C, Holmes DE, Long PE, Lovley DR.  2010.  Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations.. FEMS Microbiol Ecol. 73(3):441-9.

Aklujkar M, Young ND, Holmes D, Chavan M, Risso C, Kiss HE, Han CS, Land ML, Lovley DR.  2010.  The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.. BMC Genomics. 11:490.

Ver Eecke HC, Kelley DS, Holden JF.  2009.  Abundances of hyperthermophilic autotrophic Fe(III) oxide reducers and heterotrophs in hydrothermal sulfide chimneys of the northeastern Pacific Ocean.. Appl Environ Microbiol. 75(1):242-5.

Risso C, Sun J, Zhuang K, Mahadevan R, DeBoy R, Ismail W, Shrivastava S, Huot H, Kothari S, Daugherty S et al..  2009.  Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.. BMC Genomics. 10:447.

Abd-Alla AMM, Vlak JM, Bergoin M, Maruniak JE, Parker A, Burand JP, Jehle JA, Boucias DG.  2009.  Hytrosaviridae: a proposal for classification and nomenclature of a new insect virus family.. Arch Virol. 154(6):909-18.

Mouser PJ, N'guessan LA, Elifantz H, Holmes DE, Williams KH, Wilkins MJ, Long PE, Lovley DR.  2009.  Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater.. Environ Sci Technol. 43(12):4386-92.

Hedrick DB, Peacock AD, Lovley DR, Woodard TL, Nevin KP, Long PE, White DC.  2009.  Polar lipid fatty acids, LPS-hydroxy fatty acids, and respiratory quinones of three Geobacter strains, and variation with electron acceptor.. J Ind Microbiol Biotechnol. 36(2):205-9.

Wilkins MJ, VerBerkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan LA, Thomas BC, Nicora CD, Shah MB et al..  2009.  Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.. Appl Environ Microbiol. 75(20):6591-9.

Mouser PJ, Holmes DE, Perpetua LA, DiDonato R, Postier B, Liu A, Lovley DR.  2009.  Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation.. ISME J. 3(4):454-65.

Handa N, Amitani I, Gumlaw N, Sandler SJ, Kowalczykowski SC.  2009.  Single molecule analysis of a red fluorescent RecA protein reveals a defect in nucleoprotein filament nucleation that relates to its reduced biological functions.. J Biol Chem. 284(28):18664-73.

Holmes DE, O'Neil RA, Chavan MA, N'guessan LA, Vrionis HA, Perpetua LA, Larrahondo JM, DiDonato R, Liu A, Lovley DR.  2009.  Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments.. ISME J. 3(2):216-30.

Feinberg LF, Srikanth R, Vachet RW, Holden JF.  2008.  Constraints on anaerobic respiration in the hyperthermophilic Archaea Pyrobaculum islandicum and Pyrobaculum aerophilum.. Appl Environ Microbiol. 74(2):396-402.

O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo JM, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'guessan LA et al..  2008.  Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.. Environ Microbiol. 10(5):1218-30.

Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo JM, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR.  2008.  Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.. Microbiology. 154(Pt 5):1422-35.

Haveman SA, Didonato RJ, Villanueva L, Shelobolina ES, Postier BL, Xu B, Liu A, Lovley DR.  2008.  Genome-wide gene expression patterns and growth requirements suggest that Pelobacter carbinolicus reduces Fe(III) indirectly via sulfide production.. Appl Environ Microbiol. 74(14):4277-84.

Risso C, Methé BA, Elifantz H, Holmes DE, Lovley DR.  2008.  Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation.. Microbiology. 154(Pt 9):2589-99.

Ding Y-HR, Hixson KK, Aklujkar MA, Lipton MS, Smith RD, Lovley DR, Mester T.  2008.  Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor.. Biochim Biophys Acta. 1784(12):1935-41.

Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL.  2008.  Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules.. Genome Biol. 9(8):R121.

Villanueva L, Haveman SA, Summers ZM, Lovley DR.  2008.  Quantification of Desulfovibrio vulgaris dissimilatory sulfite reductase gene expression during electron donor- and electron acceptor-limited growth.. Appl Environ Microbiol. 74(18):5850-3.

Yennaco LJ, Hu Y, Holden JF.  2007.  Characterization of malate dehydrogenase from the hyperthermophilic archaeon Pyrobaculum islandicum.. Extremophiles. 11(5):741-6.

Butler JE, He Q, Nevin KP, He Z, Zhou J, Lovley DR.  2007.  Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site.. BMC Genomics. 8:180.

Shelobolina ES, Nevin KP, Blakeney-Hayward JD, Johnsen CV, Plaia TW, Krader P, Woodard T, Holmes DE, Vanpraagh C G, Lovley DR.  2007.  Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.. Int J Syst Evol Microbiol. 57(Pt 1):126-35.

Holmes DE, Nevin KP, Woodard TL, Peacock AD, Lovley DR.  2007.  Prolixibacter bellariivorans gen. nov., sp. nov., a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell.. Int J Syst Evol Microbiol. 57(Pt 4):701-7.

Nevin KP, Holmes DE, Woodard TL, Covalla SF, Lovley DR.  2007.  Reclassification of Trichlorobacter thiogenes as Geobacter thiogenes comb. nov.. Int J Syst Evol Microbiol. 57(Pt 3):463-6.

Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP et al..  2007.  Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.. ISME J. 1(8):663-77.

Chen M, Hancock LC, Lopes JM.  2007.  Transcriptional regulation of yeast phospholipid biosynthetic genes.. Biochim Biophys Acta. 1771(3):310-21.

Feinberg LF, Holden JF.  2006.  Characterization of dissimilatory Fe(III) versus NO3- reduction in the hyperthermophilic archaeon Pyrobaculum aerophilum.. J Bacteriol. 188(2):525-31.

Hu Y, Holden JF.  2006.  Citric acid cycle in the hyperthermophilic archaeon Pyrobaculum islandicum grown autotrophically, heterotrophically, and mixotrophically with acetate.. J Bacteriol. 188(12):4350-5.

Haveman SA, Holmes DE, Ding Y-HR, Ward JE, Didonato RJ, Lovley DR.  2006.  c-Type cytochromes in Pelobacter carbinolicus.. Appl Environ Microbiol. 72(11):6980-5.

Hancock LC, Behta RP, Lopes JM.  2006.  Genomic analysis of the Opi- phenotype.. Genetics. 173(2):621-34.

Kovacevic S, Anderson D, Morita YS, Patterson J, Haites R, McMillan BNI, Coppel R, McConville MJ, Billman-Jacobe H.  2006.  Identification of a novel protein with a role in lipoarabinomannan biosynthesis in mycobacteria.. J Biol Chem. 281(14):9011-7.

Holmes DE, Chaudhuri SK, Nevin KP, Mehta T, Methé BA, Liu A, Ward JE, Woodard TL, Webster J, Lovley DR.  2006.  Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens.. Environ Microbiol. 8(10):1805-15.

Morita YS, Sena CBC, Waller RF, Kurokawa K, Sernee FM, Nakatani F, Haites RE, Billman-Jacobe H, McConville MJ, Maeda Y et al..  2006.  PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of phosphatidylinositol mannoside in mycobacteria.. J Biol Chem. 281(35):25143-55.

Ding Y-HR, Hixson KK, Giometti CS, Stanley A, Esteve-Núñez A, Khare T, Tollaksen SL, Zhu W, Adkins JN, Lipton MS et al..  2006.  The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions.. Biochim Biophys Acta. 1764(7):1198-206.

Hong Y, Nagamune K, Morita YS, Nakatani F, Ashida H, Maeda Y, Kinoshita T.  2006.  Removal or maintenance of inositol-linked acyl chain in glycosylphosphatidylinositol is critical in trypanosome life cycle.. J Biol Chem. 281(17):11595-602.

Daniels R, Rusan NM, Wilbuer A-K, Norkin LC, Wadsworth P, Hebert DN.  2006.  Simian virus 40 late proteins possess lytic properties that render them capable of permeabilizing cellular membranes.. J Virol. 80(13):6575-87.

Hong Y, Nagamune K, Ohishi K, Morita YS, Ashida H, Maeda Y, Kinoshita T.  2006.  TbGPI16 is an essential component of GPI transamidase in Trypanosoma brucei.. FEBS Lett. 580(2):603-6.

Haites RE, Morita YS, McConville MJ, Billman-Jacobe H.  2005.  Function of phosphatidylinositol in mycobacteria.. J Biol Chem. 280(12):10981-7.

Nevin KP, Holmes DE, Woodard TL, Hinlein ES, Ostendorf DW, Lovley DR.  2005.  Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates.. Int J Syst Evol Microbiol. 55(Pt 4):1667-74.

Kang J Y, Hong Y, Ashida H, Shishioh N, Murakami Y, Morita YS, Maeda Y, Kinoshita T.  2005.  PIG-V involved in transferring the second mannose in glycosylphosphatidylinositol.. J Biol Chem. 280(10):9489-97.

Holmes DE, Nevin KP, O'Neil RA, Ward JE, Adams LA, Woodard TL, Vrionis HA, Lovley DR.  2005.  Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes.. Appl Environ Microbiol. 71(11):6870-7.

Hinds T, Sandler SJ.  2004.  Allele specific synthetic lethality between priC and dnaAts alleles at the permissive temperature of 30 degrees C in E. coli K-12.. BMC Microbiol. 4:47.

Holmes DE, Nevin KP, Lovley DR.  2004.  Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.. Int J Syst Evol Microbiol. 54(Pt 5):1591-9.

Lovley DR, Holmes DE, Nevin KP.  2004.  Dissimilatory Fe(III) and Mn(IV) reduction.. Adv Microb Physiol. 49:219-86.

Holmes DE, Bond DR, Lovley DR.  2004.  Electron transfer by Desulfobulbus propionicus to Fe(III) and graphite electrodes.. Appl Environ Microbiol. 70(2):1234-7.

Holmes DE, Nevin KP, Lovley DR.  2004.  In situ expression of nifD in Geobacteraceae in subsurface sediments.. Appl Environ Microbiol. 70(12):7251-9.

Holmes DE, Bond DR, O'Neil RA, Reimers CE, Tender LR, Lovley DR.  2004.  Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments.. Microb Ecol. 48(2):178-90.

Holmes DE, Nicoll JS, Bond DR, Lovley DR.  2004.  Potential role of a novel psychrotolerant member of the family Geobacteraceae, Geopsychrobacter electrodiphilus gen. nov., sp. nov., in electricity production by a marine sediment fuel cell.. Appl Environ Microbiol. 70(10):6023-30.

Lloyd JR, Leang C, Hodges Myerson AL, Coppi MV, Cuifo S, Methe B, Sandler SJ, Lovley DR.  2003.  Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens.. Biochem J. 369(Pt 1):153-61.

Methé BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ et al..  2003.  Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.. Science. 302(5652):1967-9.

Lim H, Eng J, Yates JR, Tollaksen SL, Giometti CS, Holden JF, Adams MWW, Reich CI, Olsen GJ, Hays LG.  2003.  Identification of 2D-gel proteins: a comparison of MALDI/TOF peptide mass mapping to mu LC-ESI tandem mass spectrometry.. J Am Soc Mass Spectrom. 14(9):957-70.

Holden JF, Adams MWW.  2003.  Microbe-metal interactions in marine hydrothermal environments.. Curr Opin Chem Biol. 7(2):160-5.

Kashefi K, Holmes DE, Baross JA, Lovley DR.  2003.  Thermophily in the Geobacteraceae: Geothermobacter ehrlichii gen. nov., sp. nov., a novel thermophilic member of the Geobacteraceae from the "Bag City" hydrothermal vent.. Appl Environ Microbiol. 69(5):2985-93.

Rothermich MM, Hayes LA, Lovley DR.  2002.  Anaerobic, sulfate-dependent degradation of polycyclic aromatic hydrocarbons in petroleum-contaminated harbor sediment.. Environ Sci Technol. 36(22):4811-7.

Bond DR, Holmes DE, Tender LM, Lovley DR.  2002.  Electrode-reducing microorganisms that harvest energy from marine sediments.. Science. 295(5554):483-5.

Holmes DE, Finneran KT, O'Neil RA, Lovley DR.  2002.  Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments.. Appl Environ Microbiol. 68(5):2300-6.

Klapper L, McKnight DM, Fulton RJ, Blunt-Harris EL, Nevin KP, Lovley DR, Hatcher PG.  2002.  Fulvic acid oxidation state detection using fluorescence spectroscopy.. Environ Sci Technol. 36(14):3170-5.

Kashefi K, Tor JM, Holmes DE, Gaw Van Praagh CV, Reysenbach A-L, Lovley DR.  2002.  Geoglobus ahangari gen. nov., sp. nov., a novel hyperthermophilic archaeon capable of oxidizing organic acids and growing autotrophically on hydrogen with Fe(III) serving as the sole electron acceptor.. Int J Syst Evol Microbiol. 52(Pt 3):719-28.

Tender LM, Reimers CE, Stecher HA, Holmes DE, Bond DR, Lowy DA, Pilobello K, Fertig SJ, Lovley DR.  2002.  Harnessing microbially generated power on the seafloor.. Nat Biotechnol. 20(8):821-5.

Mukherjee J, Chios K, Fishwild D, Hudson D, O'Donnell S, Rich SM, Donohue-Rolfe A, Tzipori S.  2002.  Human Stx2-specific monoclonal antibodies prevent systemic complications of Escherichia coli O157:H7 infection.. Infect Immun. 70(2):612-9.

Finneran KT, Housewright ME, Lovley DR.  2002.  Multiple influences of nitrate on uranium solubility during bioremediation of uranium-contaminated subsurface sediments.. Environ Microbiol. 4(9):510-6.

Mukherjee J, Chios K, Fishwild D, Hudson D, O'Donnell S, Rich SM, Donohue-Rolfe A, Tzipori S.  2002.  Production and characterization of protective human antibodies against Shiga toxin 1.. Infect Immun. 70(10):5896-9.

Hayes LA, Lovley DR.  2002.  Specific 16S rDNA sequences associated with naphthalene degradation under sulfate-reducing conditions in harbor sediments.. Microb Ecol. 43(1):134-45.

Kashefi K, Holmes DE, Reysenbach A-L, Lovley DR.  2002.  Use of Fe(III) as an electron acceptor to recover previously uncultured hyperthermophiles: isolation and characterization of Geothermobacterium ferrireducens gen. nov., sp. nov.. Appl Environ Microbiol. 68(4):1735-42.

Craig SA, Holden JF, Khaled MY.  2001.  Determination of polydextrose in foods by ion chromatography: collaborative study.. J AOAC Int. 84(2):472-8.

Holden JF, Takai K, Summit M, Bolton S, Zyskowski J, Baross JA.  2001.  Diversity among three novel groups of hyperthermophilic deep-sea Thermococcus species from three sites in the northeastern Pacific Ocean.. FEMS Microbiol Ecol. 36(1):51-60.

Holden JF, Poole Ii FL, Tollaksen SL, Giometti CS, Lim H, Yates Iii JR, Adams MW.  2001.  Identification of membrane proteins in the hyperthermophilic archaeon pyrococcus furiosus using proteomics and prediction programs.. Comp Funct Genomics. 2(5):275-88.

Magnuson TS, Isoyama N, Hodges-Myerson AL, Davidson G, Maroney MJ, Geesey GG, Lovley DR.  2001.  Isolation, characterization and gene sequence analysis of a membrane-associated 89 kDa Fe(III) reducing cytochrome c from Geobacter sulfurreducens.. Biochem J. 359(Pt 1):147-52.

Adams MW, Holden JF, Menon AL, Schut GJ, Grunden AM, Hou C, Hutchins AM, Jenney FE, Kim C, Ma K et al..  2001.  Key role for sulfur in peptide metabolism and in regulation of three hydrogenases in the hyperthermophilic archaeon Pyrococcus furiosus.. J Bacteriol. 183(2):716-24.

Hutchins AM, Holden JF, Adams MW.  2001.  Phosphoenolpyruvate synthetase from the hyperthermophilic archaeon Pyrococcus furiosus.. J Bacteriol. 183(2):709-15.

Magnuson TS, Hodges-Myerson AL, Lovley DR.  2000.  Characterization of a membrane-bound NADH-dependent Fe(3+) reductase from the dissimilatory Fe(3+)-reducing bacterium Geobacter sulfurreducens.. FEMS Microbiol Lett. 185(2):205-11.

Craig SA, Holden JF, Khaled MY, Craig SA, Holden JF, Khaled MY.  2000.  Determination of polydextrose as dietary fiber in foods.. J AOAC Int. 83(4):1006-12.

Sandler SJ, Hugenholtz P, Schleper C, DeLong EF, Pace NR, Clark AJ.  1999.  Diversity of radA genes from cultured and uncultured archaea: comparative analysis of putative RadA proteins and their use as a phylogenetic marker.. J Bacteriol. 181(3):907-15.

Rich SM, Licht MC, Hudson RR, Ayala FJ.  1998.  Malaria's Eve: evidence of a recent population bottleneck throughout the world populations of Plasmodium falciparum.. Proc Natl Acad Sci U S A. 95(8):4425-30.

Klingbeil MM, Walker DJ, Huang YJ, Komuniecki R.  1997.  Altered phosphorylation/inactivation of a novel pyruvate dehydrogenase in adult Ascaris suum muscle.. Mol Biochem Parasitol. 90(1):323-6.

Rich SM, Rosenthal BM, Telford SR, Spielman A, Hartl DL, Ayala FJ.  1997.  Heterogeneity of the internal transcribed spacer (ITS-2) region within individual deer ticks.. Insect Mol Biol. 6(2):123-9.

Rich SM, Hudson RR, Ayala FJ.  1997.  Plasmodium falciparum antigenic diversity: evidence of clonal population structure.. Proc Natl Acad Sci U S A. 94(24):13040-5.

Klingbeil MM, Walker DJ, Arnette R, Sidawy E, Hayton K, Komuniecki PR, Komuniecki R.  1996.  Identification of a novel dihydrolipoyl dehydrogenase-binding protein in the pyruvate dehydrogenase complex of the anaerobic parasitic nematode, Ascaris suum.. J Biol Chem. 271(10):5451-7.

Boyd EF, Hill CW, Rich SM, Hartl DL.  1996.  Mosaic structure of plasmids from natural populations of Escherichia coli.. Genetics. 143(3):1091-100.

Armstrong PM, Rich SM, Smith RD, Hartl DL, Spielman A, Telford SR.  1996.  A new Borrelia infecting Lone Star ticks.. Lancet. 347(8993):67-8.

Baross JA, Holden JF.  1996.  Overview of hyperthermophiles and their heat-shock proteins.. Adv Protein Chem. 48:1-34.

Rich SM, Caporale DA, Telford SR, Kocher TD, Hartl DL, Spielman A.  1995.  Distribution of the Ixodes ricinus-like ticks of eastern North America.. Proc Natl Acad Sci U S A. 92(14):6284-8.

Hegde S, Sandler SJ, Clark AJ, Madiraju MV.  1995.  recO and recR mutations delay induction of the SOS response in Escherichia coli.. Mol Gen Genet. 246(2):254-8.

Holden JF, Baross JA.  1993.  Enhanced thermotolerance and temperature-induced changes in protein composition in the hyperthermophilic archaeon ES4.. J Bacteriol. 175(10):2839-43.

Horwitz CA, Henle W, Henle G, Polesky H, Wexler H, Ward P.  1976.  The specificity of heterophil antibodies in patients and healthy donors with no or minimal signs of infectious mononucleosis.. Blood. 47(1):91-8.

Miller DD, Hsu FL, Ruffolo RR, Patil PN.  1976.  Stereochemical studies of adrenergic drugs. Optically active derivatives of imidazolines.. J Med Chem. 19(12):1382-4.

Hendrickson WA, Ward KB.  1975.  Atomic models for the polypeptide backbones of myohemerythrin and hemerythrin.. Biochem Biophys Res Commun. 66(4):1349-56.

Schmoldt A, Benthe HF, Haberland G.  1975.  Digitoxin metabolism by rat liver microsomes.. Biochem Pharmacol. 24(17):1639-41.

Wiesmann UN, DiDonato S, Herschkowitz NN.  1975.  Effect of chloroquine on cultured fibroblasts: release of lysosomal hydrolases and inhibition of their uptake.. Biochem Biophys Res Commun. 66(4):1338-43.

Huijbregts LA, Schreurs M.  1975.  Evaluation of amplitude and frequency changes of miniature potentials with a poor signal-to-noise ratio.. Comp Biochem Physiol C. 52(1):11-6.

Reinis Z, Lojda Z, Heyrovský A, Horáková D, Reisenauer R.  1975.  [Influence of beta-blocking agents on experimental atherosclerosis of cocks (author's transl)].. Cas Lek Cesk. 114(43):1320-5.

Maneksha S, Harry TV.  1975.  Lorazepam in sexual disorders.. Br J Clin Pract. 29(7):175-6.

Halawani MEEl, Waibel PE.  1975.  The relative importance of monoamine oxidase and catechol-O-methyl transferase on the physiologic response to administered norepinephrine in the turkey.. Comp Biochem Physiol C. 52(1):35-9.