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Zhou E, Li F, Zhang D, Xu D, Li Z, Jia R, Jin Y, Song H, Li H, Wang Q et al..\'a0 2022.\'a0\'a0Direct microbial electron uptake as a mechanism for stainless steel corrosion in aerobic environments.. Water Res. 219:118553.\par \par Lovley DR, Holmes DE.\'a0 2022.\'a0\'a0Electromicrobiology: the ecophysiology of phylogenetically diverse electroactive microorganisms.. Nat Rev Microbiol. 20(1):5-19.\par \par Zhou J, Holmes DE, Tang H-Y, Lovley DR.\'a0 2021.\'a0\'a0Correlation of Key Physiological Properties of  Isolates with Environment of Origin.. Appl Environ Microbiol. 87(13):e0073121.\par \par Liang D, Liu X, Woodard TL, Holmes DE, Smith JA, Nevin KP, Feng Y, Lovley DR.\'a0 2021.\'a0\'a0Extracellular Electron Exchange Capabilities of  and .. Environ Sci Technol. 55(23):16195-16203.\par \par Holmes DE, Zhou J, Ueki T, Woodard T, Lovley DR.\'a0 2021.\'a0\'a0Mechanisms for Electron Uptake by Methanosarcina acetivorans during Direct Interspecies Electron Transfer.. mBio. 12(5):e0234421.\par \par Tang H-Y, Yang C, Ueki T, Pittman CC, Xu D, Woodard TL, Holmes DE, Gu T, Wang F, Lovley DR.\'a0 2021.\'a0\'a0Stainless steel corrosion via direct iron-to-microbe electron transfer by Geobacter species.. ISME J. 15(10):3084-3093.\par \par Brown AR, Gordon RA, Hyland SN, M Siegrist S, Grimes CL.\'a0 2020.\'a0\'a0Chemical Biology Tools for Examining the Bacterial Cell Wall.. Cell Chem Biol. 27(8):1052-1062.\par \par Lovley DR, Holmes DE.\'a0 2020.\'a0\'a0Protein Nanowires: the Electrification of the Microbial World and Maybe Our Own.. J Bacteriol. 202(20)\par \par Walker DJF, Nevin KP, Holmes DE, Rotaru A-E, Ward JE, Woodard TL, Zhu J, Ueki T, Nonnenmann SS, McInerney MJ et al..\'a0 2020.\'a0\'a0Syntrophus conductive pili demonstrate that common hydrogen-donating syntrophs can have a direct electron transfer option.. ISME J. 14(3):837-846.\par \par Walker DJF, Martz E, Holmes DE, Zhou Z, Nonnenmann SS, Lovley DR.\'a0 2019.\'a0\'a0The Archaellum of Methanospirillum hungatei Is Electrically Conductive.. mBio. 10(2)\par \par Fiolek TJ, Banahene N, Kavunja HW, Holmes NJ, Rylski AK, Pohane AArunrao, M Siegrist S, Swarts BM.\'a0 2019.\'a0\'a0Engineering the Mycomembrane of Live Mycobacteria with an Expanded Set of Trehalose Monomycolate Analogues.. Chembiochem. 20(10):1282-1291.\par \par Tang H-Y, Holmes DE, Ueki T, Palacios PA, Lovley DR.\'a0 2019.\'a0\'a0Iron Corrosion via Direct Metal-Microbe Electron Transfer.. mBio. 10(3)\par \par Holmes DE, Ueki T, Tang H-Y, Zhou J, Smith JA, Chaput G, Lovley DR.\'a0 2019.\'a0\'a0A Membrane-Bound Cytochrome Enables  To Conserve Energy from Extracellular Electron Transfer.. mBio. 10(4)\par \par Ueki T, Nevin KP, Woodard TL, Aklujkar MA, Holmes DE, Lovley DR.\'a0 2018.\'a0\'a0Construction of a  Strain With Exceptional Growth on Cathodes.. Front Microbiol. 9:1512.\par \par Walker DJf, Adhikari RY, Holmes DE, Ward JE, Woodard TL, Nevin KP, Lovley DR.\'a0 2018.\'a0\'a0Electrically conductive pili from pilin genes of phylogenetically diverse microorganisms.. ISME J. 12(1):48-58.\par \par Holmes DE, Rotaru A-E, Ueki T, Shrestha PM, Ferry JG, Lovley DR.\'a0 2018.\'a0\'a0Electron and Proton Flux for Carbon Dioxide Reduction in  During Direct Interspecies Electron Transfer.. Front Microbiol. 9:3109.\par \par Holmes DE, Orelana R, Giloteaux L, Wang L-Y, Shrestha P, Williams K, Lovley DR, Rotaru A-E.\'a0 2018.\'a0\'a0Potential for Methanosarcina to Contribute to Uranium Reduction during Acetate-Promoted Groundwater Bioremediation.. Microb Ecol. 76(3):660-667.\par \par Hayashi JM, Richardson K, Melzer ES, Sandler SJ, Aldridge BB, M. Siegrist S, Morita YS.\'a0 2018.\'a0\'a0Stress-Induced Reorganization of the Mycobacterial Membrane Domain. \{mBio\}. 9\par \par Holmes DE, Shrestha PM, Walker DJF, Dang Y, Nevin KP, Woodard TL, Lovley DR.\'a0 2017.\'a0\'a0Metatranscriptomic Evidence for Direct Interspecies Electron Transfer between Geobacter and Methanothrix Species in Methanogenic Rice Paddy Soils.. Appl Environ Microbiol. 83(9)\par \par Holmes DE, Dang Y, Walker DJF, Lovley DR.\'a0 2016.\'a0\'a0The electrically conductive pili of pecies are a recently evolved feature for extracellular electron transfer.. Microb Genom. 2(8):e000072.\par \par Dang Y, Holmes DE, Zhao Z, Woodard TL, Zhang Y, Sun D, Wang L-Y, Nevin KP, Lovley DR.\'a0 2016.\'a0\'a0Enhancing anaerobic digestion of complex organic waste with carbon-based conductive materials.. Bioresour Technol. 220:516-522.\par \par Stewart LC, Llewellyn JG, Butterfield DA, Lilley MD, Holden JF.\'a0 2016.\'a0\'a0Hydrogen and thiosulfate limits for growth of a thermophilic, autotrophic Desulfurobacterium species from a deep-sea hydrothermal vent.. Environ Microbiol Rep. 8(2):196-200.\par \par Hensley SA, Moreira E, Holden JF.\'a0 2016.\'a0\'a0Hydrogen Production and Enzyme Activities in the Hyperthermophile Thermococcus paralvinellae Grown on Maltose, Tryptone, and Agricultural Waste.. Front Microbiol. 7:167.\par \par Zhao Z, Zhang Y, Holmes DE, Dang Y, Woodard TL, Nevin KP, Lovley DR.\'a0 2016.\'a0\'a0Potential enhancement of direct interspecies electron transfer for syntrophic metabolism of propionate and butyrate with biochar in up-flow anaerobic sludge blanket reactors.. Bioresour Technol. 209:148-56.\par \par Kim Y-T, Jung J-H, Stewart LC, Kwon S-W, Holden JF, Park C-S.\'a0 2015.\'a0\'a0Complete genome sequence of the hyperthermophilic methanogen Methanocaldococcus bathoardescens JH146(T) isolated from the basalt subseafloor.. Mar Genomics. 24 Pt 3:229-30.\par \par Holmes DE, Giloteaux L, Chaurasia AK, Williams KH, Luef B, Wilkins MJ, Wrighton KC, Thompson CA, Comolli LR, Lovley DR.\'a0 2015.\'a0\'a0Evidence of Geobacter-associated phage in a uranium-contaminated aquifer.. ISME J. 9(2):333-46.\par \par Wang DT, Gruen DS, Lollar BSherwood, Hinrichs K-U, Stewart LC, Holden JF, Hristov AN, Pohlman JW, Morrill PL, K\'f6nneke M et al..\'a0 2015.\'a0\'a0Methane cycling. Nonequilibrium clumped isotope signals in microbial methane.. Science. 348(6233):428-31.\par \par Stewart LC, Jung J-H, Kim Y-T, Kwon S-W, Park C-S, Holden JF.\'a0 2015.\'a0\'a0Methanocaldococcus bathoardescens sp. nov., a hyperthermophilic methanogen isolated from a volcanically active deep-sea hydrothermal vent.. Int J Syst Evol Microbiol. 65(Pt 4):1280-3.\par \par Boguslawski KM, Hill PA, Griffith KL.\'a0 2015.\'a0\'a0Novel mechanisms of controlling the activities of the transcription factors Spo0A and ComA by the plasmid-encoded quorum sensing regulators Rap60-Phr60 in Bacillus subtilis.. Mol Microbiol. \par \par Sang H, Hulvey J, Popko JT, Lopes J, Swaminathan A, Chang T, Jung G.\'a0 2015.\'a0\'a0A pleiotropic drug resistance transporter is involved in reduced sensitivity to multiple fungicide classes in Sclerotinia homoeocarpa (F.T. Bennett).. Mol Plant Pathol. 16(3):251-61.\par \par Holmes DE, Nevin KP, Snoeyenbos-West OL, Woodard TL, Strickland JN, Lovley DR.\'a0 2015.\'a0\'a0Protozoan grazing reduces the current output of microbial fuel cells.. Bioresour Technol. 193:8-14.\par \par Muller M, Hutin S, Marigold O, Li KH, Burlingame A, Glaunsinger BA.\'a0 2015.\'a0\'a0A Ribonucleoprotein Complex Protects the Interleukin-6 mRNA from Degradation by Distinct Herpesviral Endonucleases. PLOS Pathogens. 11:e1004899.\par \par Jeon E-J, Jung J-H, Seo D-H, Jung D-H, Holden JF, Park C-S.\'a0 2014.\'a0\'a0Bioinformatic and biochemical analysis of a novel maltose-forming ?-amylase of the GH57 family in the hyperthermophilic archaeon Thermococcus sp. CL1.. Enzyme Microb Technol. 60:9-15.\par \par Jung J-H, Kim Y-T, Jeon E-J, Seo D-H, Hensley SA, Holden JF, Lee J-H, Park C-S.\'a0 2014.\'a0\'a0Complete genome sequence of hyperthermophilic archaeon Thermococcus sp. ES1.. J Biotechnol. 174C:14-15.\par \par Shanmugam R, Aklujkar M, Sch\'e4fer M, Reinhardt R, Nickel O, Reuter G, Lovley DR, Ehrenhofer-Murray A, Nellen W, Ankri S et al..\'a0 2014.\'a0\'a0The Dnmt2 RNA methyltransferase homolog of Geobacter sulfurreducens specifically methylates tRNA-Glu.. Nucleic Acids Res. 42(10):6487-96.\par \par Jung J-H, Seo D-H, Holden JF, Park C-S.\'a0 2014.\'a0\'a0Identification and Characterization of an Archaeal Kojibiose Catabolic Pathway in the Hyperthermophilic Pyrococcus sp. Strain ST04.. J Bacteriol. 196(5):1122-31.\par \par T Lin J, Breves EA, Dyar MD, Eecke HCVer, Jamieson JW, Holden JF.\'a0 2014.\'a0\'a0Magnetite formation from ferrihydrite by hyperthermophilic archaea from Endeavour Segment, Juan de Fuca Ridge hydrothermal vent chimneys.. Geobiology. 12(3):200-11.\par \par Jung J-H, Seo D-H, Holden JF, Park C-S.\'a0 2014.\'a0\'a0Maltose-forming ?-amylase from the hyperthermophilic archaeon Pyrococcus sp. ST04.. Appl Microbiol Biotechnol. 98(5):2121-31.\par \par Holmes DE, Giloteaux L, Orellana R, Williams KH, Robbins MJ, Lovley DR.\'a0 2014.\'a0\'a0Methane production from protozoan endosymbionts following stimulation of microbial metabolism within subsurface sediments.. Front Microbiol. 5:366.\par \par Orellana R, Hixson KK, Murphy S, Mester T, Sharma ML, Lipton MS, Lovley DR.\'a0 2014.\'a0\'a0Proteome of Geobacter sulfurreducens in the presence of U(VI).. Microbiology (Reading). 160(Pt 12):2607-2617.\par \par Park K-H, Jung J-H, Park S-G, Lee M-E, Holden JF, Park C-S, Woo E-J.\'a0 2014.\'a0\'a0Structural features underlying the selective cleavage of a novel exo-type maltose-forming amylase from Pyrococcus sp. ST04.. Acta Crystallogr D Biol Crystallogr. 70(Pt 6):1659-68.\par \par Hensley SA, Jung J-H, Park C-S, Holden JF.\'a0 2014.\'a0\'a0Thermococcus paralvinellae sp. nov. and Thermococcus cleftensis sp. nov. of hyperthermophilic heterotrophs from deep-sea hydrothermal vents.. Int J Syst Evol Microbiol. 64(Pt 11):3655-9.\par \par DeAngelis KM, Chivian D, Fortney J, Simmons BA, Hazen TC, Silver WL.\'a0 2013.\'a0\'a0Changes in microbial dynamics during long-term decomposition in tropical forests.. Soil Biology and Biochemistry. 66:60-68.\par \par Giloteaux L, Holmes DE, Williams KH, Wrighton KC, Wilkins MJ, Montgomery AP, Smith JA, Orellana R, Thompson CA, Roper TJ et al..\'a0 2013.\'a0\'a0Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation.. ISME J. 7(2):370-83.\par \par Rodrigues JLM, Pellizari VH, Mueller R, Baek K, Jesus Eda C, Paula FS, Mirza B, Hamaoui GS, Tsai SMui, Feigl B et al..\'a0 2013.\'a0\'a0Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities.. Proc Natl Acad Sci U S A. 110(3):988-93.\par \par Fukuda T, Matsumura T, Ato M, Hamasaki M, Nishiuchi Y, Murakami Y, Maeda Y, Yoshimori T, Matsumoto S, Kobayashi K et al..\'a0 2013.\'a0\'a0Critical roles for lipomannan and lipoarabinomannan in cell wall integrity of mycobacteria and pathogenesis of tuberculosis.. MBio. 4(1)\par \par Holmes DE, Giloteaux L, Williams KH, Wrighton KC, Wilkins MJ, Thompson CA, Roper TJ, Long PE, Lovley DR.\'a0 2013.\'a0\'a0Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater.. ISME J. 7(7):1286-98.\par \par Williams KH, Wilkins MJ, A N'Guessan L, Arey B, Dodova E, Dohnalkova A, Holmes D, Lovley DR, Long PE.\'a0 2013.\'a0\'a0Field evidence of selenium bioreduction in a uranium-contaminated aquifer.. Environ Microbiol Rep. 5(3):444-52.\par \par Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LAnn, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR et al..\'a0 2013.\'a0\'a0Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.. PLoS One. 8(3):e57819.\par \par Ver Eecke HC, Akerman NH, Huber JA, Butterfield DA, Holden JF.\'a0 2013.\'a0\'a0Growth kinetics and energetics of a deep-sea hyperthermophilic methanogen under varying environmental conditions.. Environ Microbiol Rep. 5(5):665-71.\par \par Deangelis KM, D'haeseleer P, Chivian D, Simmons B, Arkin AP, Mavromatis K, Malfatti S, Tringe S, Hazen TC.\'a0 2013.\'a0\'a0Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.. Stand Genomic Sci. 7(3):382-98.\par \par Holmes DE, Giloteaux L, Barlett M, Chavan MA, Smith JA, Williams KH, Wilkins M, Long P, Lovley DR.\'a0 2013.\'a0\'a0Molecular analysis of the in situ growth rates of subsurface Geobacter species.. Appl Environ Microbiol. 79(5):1646-53.\par \par Lee J-E, Kim I-H, Jung J-H, Seo D-H, Kang S-G, Holden JF, Cha J, Park C-S.\'a0 2013.\'a0\'a0Molecular cloning and enzymatic characterization of cyclomaltodextrinase from hyperthermophilic archaeon Thermococcus sp. CL1.. J Microbiol Biotechnol. 23(8):1060-9.\par \par Hatzios SK, Baer CE, Rustad TR, M Siegrist S, Pang JM, Ortega C, Alber T, Grundner C, Sherman DR, Bertozzi CR.\'a0 2013.\'a0\'a0Osmosensory signaling in Mycobacterium tuberculosis mediated by a eukaryotic-like Ser/Thr protein kinase.. Proc Natl Acad Sci U S A. 110(52):E5069-77.\par \par Deangelis KM, Fortney JL, Borglin S, Silver WL, Simmons BA, Hazen TC.\'a0 2012.\'a0\'a0Anaerobic decomposition of switchgrass by tropical soil-derived feedstock-adapted consortia.. MBio. 3(1)\par \par Borglin S, Joyner D, Deangelis KM, Khudyakov J, D'haeseleer P, Joachimiak MP, Hazen T.\'a0 2012.\'a0\'a0Application of phenotypic microarrays to environmental microbiology.. Curr Opin Biotechnol. 23(1):41-8.\par \par McKeever R, Sheppard D, N\'fcsslein K, Baek K-H, Rieber K, Ergas SJ, Forbes R, Hilyard M, Park C.\'a0 2012.\'a0\'a0Biodegradation of ethylene dibromide (1,2-dibromoethane [EDB]) in microcosms simulating in situ and biostimulated conditions.. J Hazard Mater. 209-210:92-8.\par \par Neveu G, Cassonnet P, Vidalain P-O, Rolloy C, Mendoza J, Jones L, Tangy F, Muller M, Demeret C, Tafforeau L et al..\'a0 2012.\'a0\'a0Comparative analysis of virus?host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. Methods. 58:349?359.\par \par Jung J-H, Lee J-H, Holden JF, Seo D-H, Shin H, Kim H-Y, Kim W, Ryu S, Park C-S.\'a0 2012.\'a0\'a0Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge.. J Bacteriol. 194(16):4434-5.\par \par Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S.\'a0 2012.\'a0\'a0Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.\par \par Aklujkar M, Haveman SA, DiDonato R, Chertkov O, Han CS, Land ML, Brown P, Lovley DR.\'a0 2012.\'a0\'a0The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.. BMC Genomics. 13:690.\par \par Holmes DE, Risso C, Smith JA, Lovley DR.\'a0 2012.\'a0\'a0Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus.. ISME J. 6(1):146-57.\par \par Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP.\'a0 2012.\'a0\'a0Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus.. Proc Natl Acad Sci U S A. 109(32):E2173-82.\par \par Ver Eecke HC, Butterfield DA, Huber JA, Lilley MD, Olson EJ, Roe KK, Evans LJ, Merkel AY, Cantin HV, Holden JF.\'a0 2012.\'a0\'a0Hydrogen-limited growth of hyperthermophilic methanogens at deep-sea hydrothermal vents.. Proc Natl Acad Sci U S A. 109(34):13674-9.\par \par Summers ZM, Ueki T, Ismail W, Haveman SA, Lovley DR.\'a0 2012.\'a0\'a0Laboratory evolution of Geobacter sulfurreducens for enhanced growth on lactate via a single-base-pair substitution in a transcriptional regulator.. ISME J. 6(5):975-83.\par \par Liang Y, Van Nostrand JD, N'guessan LA, Peacock AD, Deng Y, Long PE, Resch TC, Wu L, He Z, Li G et al..\'a0 2012.\'a0\'a0Microbial functional gene diversity with a shift of subsurface redox conditions during In Situ uranium reduction.. Appl Environ Microbiol. 78(8):2966-72.\par \par Jang S, Sandler SJ, Harshey RM.\'a0 2012.\'a0\'a0Mu insertions are repaired by the double-strand break repair pathway of Escherichia coli.. PLoS Genet. 8(4):e1002642.\par \par Swarts BM, Holsclaw CM, Jewett JC, Alber M, Fox DM, M Siegrist S, Leary JA, Kalscheuer R, Bertozzi CR.\'a0 2012.\'a0\'a0Probing the mycobacterial trehalome with bioorthogonal chemistry.. J Am Chem Soc. 134(39):16123-6.\par \par Burand JP, Hunter WB.\'a0 2012.\'a0\'a0RNAi: Future in insect management.. J Invertebr Pathol. \par \par He Y, Swaminathan A, Lopes JM.\'a0 2012.\'a0\'a0Transcription regulation of the Saccharomyces cerevisiae PHO5 gene by the Ino2p and Ino4p basic helix-loop-helix proteins.. Mol Microbiol. 83(2):395-407.\par \par Holmes DE, Risso C, Smith JA, Lovley DR.\'a0 2011.\'a0\'a0Anaerobic oxidation of benzene by the hyperthermophilic archaeon Ferroglobus placidus.. Appl Environ Microbiol. 77(17):5926-33.\par \par Deangelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC.\'a0 2011.\'a0\'a0Characterization of trapped lignin-degrading microbes in tropical forest soil.. PLoS One. 6(4):e19306.\par \par Deangelis KM, D'haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport K W, Goodwin L et al..\'a0 2011.\'a0\'a0Complete genome sequence of "Enterobacter lignolyticus" SCF1.. Stand Genomic Sci. 5(1):69-85.\par \par Nevin KP, Hensley SA, Franks AE, Summers ZM, Ou J, Woodard TL, Snoeyenbos-West OL, Lovley DR.\'a0 2011.\'a0\'a0Electrosynthesis of organic compounds from carbon dioxide is catalyzed by a diversity of acetogenic microorganisms.. Appl Environ Microbiol. 77(9):2882-6.\par \par Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru A-E et al..\'a0 2011.\'a0\'a0Geobacter: the microbe electric's physiology, ecology, and practical applications.. Adv Microb Physiol. 59:1-100.\par \par Deangelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME et al..\'a0 2011.\'a0\'a0PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.. Appl Environ Microbiol. 77(18):6313-22.\par \par Oslowski DM, Jung J-H, Seo D-H, Park C-S, Holden JF.\'a0 2011.\'a0\'a0Production of hydrogen from ?-1,4- and ?-1,4-linked saccharides by marine hyperthermophilic Archaea.. Appl Environ Microbiol. 77(10):3169-73.\par \par Prilusky J, Hodis E, Canner D, Decatur WA, Oberholser K, Martz E, Berchanski A, Harel M, Sussman JL.\'a0 2011.\'a0\'a0Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.. J Struct Biol. 175(2):244-52.\par \par Webley WC, Hahn DL.\'a0 2011.\'a0\'a0Respiratory Chlamydophyla pneumoniae resides primarily in the lower airway.. Eur Respir J. 38(4):994-5;authorreply995.\par \par Callister SJ, Wilkins MJ, Nicora CD, Williams KH, Banfield JF, VerBerkmoes NC, Hettich RL, N'Guessan L, Mouser PJ, Elifantz H et al..\'a0 2010.\'a0\'a0Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles.. Environ Sci Technol. 44(23):8897-903.\par \par Sun J, Haveman SA, Bui O, Fahland TR, Lovley DR.\'a0 2010.\'a0\'a0Constraint-based modeling analysis of the metabolism of two Pelobacter species.. BMC Syst Biol. 4:174.\par \par Elifantz H, N'guessan LA, Mouser PJ, Williams KH, Wilkins MJ, Risso C, Holmes DE, Long PE, Lovley DR.\'a0 2010.\'a0\'a0Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations.. FEMS Microbiol Ecol. 73(3):441-9.\par \par Aklujkar M, Young ND, Holmes D, Chavan M, Risso C, Kiss HE, Han CS, Land ML, Lovley DR.\'a0 2010.\'a0\'a0The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.. BMC Genomics. 11:490.\par \par Ver Eecke HC, Kelley DS, Holden JF.\'a0 2009.\'a0\'a0Abundances of hyperthermophilic autotrophic Fe(III) oxide reducers and heterotrophs in hydrothermal sulfide chimneys of the northeastern Pacific Ocean.. Appl Environ Microbiol. 75(1):242-5.\par \par Risso C, Sun J, Zhuang K, Mahadevan R, DeBoy R, Ismail W, Shrivastava S, Huot H, Kothari S, Daugherty S et al..\'a0 2009.\'a0\'a0Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.. BMC Genomics. 10:447.\par \par Abd-Alla AMM, Vlak JM, Bergoin M, Maruniak JE, Parker A, Burand JP, Jehle JA, Boucias DG.\'a0 2009.\'a0\'a0Hytrosaviridae: a proposal for classification and nomenclature of a new insect virus family.. Arch Virol. 154(6):909-18.\par \par Mouser PJ, N'guessan LA, Elifantz H, Holmes DE, Williams KH, Wilkins MJ, Long PE, Lovley DR.\'a0 2009.\'a0\'a0Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater.. Environ Sci Technol. 43(12):4386-92.\par \par Hedrick DB, Peacock AD, Lovley DR, Woodard TL, Nevin KP, Long PE, White DC.\'a0 2009.\'a0\'a0Polar lipid fatty acids, LPS-hydroxy fatty acids, and respiratory quinones of three Geobacter strains, and variation with electron acceptor.. J Ind Microbiol Biotechnol. 36(2):205-9.\par \par Wilkins MJ, VerBerkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan LA, Thomas BC, Nicora CD, Shah MB et al..\'a0 2009.\'a0\'a0Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.. Appl Environ Microbiol. 75(20):6591-9.\par \par Mouser PJ, Holmes DE, Perpetua LA, DiDonato R, Postier B, Liu A, Lovley DR.\'a0 2009.\'a0\'a0Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation.. ISME J. 3(4):454-65.\par \par Handa N, Amitani I, Gumlaw N, Sandler SJ, Kowalczykowski SC.\'a0 2009.\'a0\'a0Single molecule analysis of a red fluorescent RecA protein reveals a defect in nucleoprotein filament nucleation that relates to its reduced biological functions.. J Biol Chem. 284(28):18664-73.\par \par Holmes DE, O'Neil RA, Chavan MA, N'guessan LA, Vrionis HA, Perpetua LA, Larrahondo JM, DiDonato R, Liu A, Lovley DR.\'a0 2009.\'a0\'a0Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments.. ISME J. 3(2):216-30.\par \par Feinberg LF, Srikanth R, Vachet RW, Holden JF.\'a0 2008.\'a0\'a0Constraints on anaerobic respiration in the hyperthermophilic Archaea Pyrobaculum islandicum and Pyrobaculum aerophilum.. Appl Environ Microbiol. 74(2):396-402.\par \par O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo JM, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'guessan LA et al..\'a0 2008.\'a0\'a0Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.. Environ Microbiol. 10(5):1218-30.\par \par Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo JM, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR.\'a0 2008.\'a0\'a0Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.. Microbiology. 154(Pt 5):1422-35.\par \par Haveman SA, Didonato RJ, Villanueva L, Shelobolina ES, Postier BL, Xu B, Liu A, Lovley DR.\'a0 2008.\'a0\'a0Genome-wide gene expression patterns and growth requirements suggest that Pelobacter carbinolicus reduces Fe(III) indirectly via sulfide production.. Appl Environ Microbiol. 74(14):4277-84.\par \par Risso C, Meth\'e9 BA, Elifantz H, Holmes DE, Lovley DR.\'a0 2008.\'a0\'a0Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation.. Microbiology. 154(Pt 9):2589-99.\par \par Ding Y-HR, Hixson KK, Aklujkar MA, Lipton MS, Smith RD, Lovley DR, Mester T.\'a0 2008.\'a0\'a0Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor.. Biochim Biophys Acta. 1784(12):1935-41.\par \par Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL.\'a0 2008.\'a0\'a0Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules.. Genome Biol. 9(8):R121.\par \par Villanueva L, Haveman SA, Summers ZM, Lovley DR.\'a0 2008.\'a0\'a0Quantification of Desulfovibrio vulgaris dissimilatory sulfite reductase gene expression during electron donor- and electron acceptor-limited growth.. Appl Environ Microbiol. 74(18):5850-3.\par \par Yennaco LJ, Hu Y, Holden JF.\'a0 2007.\'a0\'a0Characterization of malate dehydrogenase from the hyperthermophilic archaeon Pyrobaculum islandicum.. Extremophiles. 11(5):741-6.\par \par Butler JE, He Q, Nevin KP, He Z, Zhou J, Lovley DR.\'a0 2007.\'a0\'a0Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site.. BMC Genomics. 8:180.\par \par Shelobolina ES, Nevin KP, Blakeney-Hayward JD, Johnsen CV, Plaia TW, Krader P, Woodard T, Holmes DE, Vanpraagh C G, Lovley DR.\'a0 2007.\'a0\'a0Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.. Int J Syst Evol Microbiol. 57(Pt 1):126-35.\par \par Holmes DE, Nevin KP, Woodard TL, Peacock AD, Lovley DR.\'a0 2007.\'a0\'a0Prolixibacter bellariivorans gen. nov., sp. nov., a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell.. Int J Syst Evol Microbiol. 57(Pt 4):701-7.\par \par Nevin KP, Holmes DE, Woodard TL, Covalla SF, Lovley DR.\'a0 2007.\'a0\'a0Reclassification of Trichlorobacter thiogenes as Geobacter thiogenes comb. nov.. Int J Syst Evol Microbiol. 57(Pt 3):463-6.\par \par Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP et al..\'a0 2007.\'a0\'a0Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.. ISME J. 1(8):663-77.\par \par Chen M, Hancock LC, Lopes JM.\'a0 2007.\'a0\'a0Transcriptional regulation of yeast phospholipid biosynthetic genes.. Biochim Biophys Acta. 1771(3):310-21.\par \par Feinberg LF, Holden JF.\'a0 2006.\'a0\'a0Characterization of dissimilatory Fe(III) versus NO3- reduction in the hyperthermophilic archaeon Pyrobaculum aerophilum.. 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J Biol Chem. 280(12):10981-7.\par \par Nevin KP, Holmes DE, Woodard TL, Hinlein ES, Ostendorf DW, Lovley DR.\'a0 2005.\'a0\'a0Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates.. Int J Syst Evol Microbiol. 55(Pt 4):1667-74.\par \par Kang J Y, Hong Y, Ashida H, Shishioh N, Murakami Y, Morita YS, Maeda Y, Kinoshita T.\'a0 2005.\'a0\'a0PIG-V involved in transferring the second mannose in glycosylphosphatidylinositol.. J Biol Chem. 280(10):9489-97.\par \par Holmes DE, Nevin KP, O'Neil RA, Ward JE, Adams LA, Woodard TL, Vrionis HA, Lovley DR.\'a0 2005.\'a0\'a0Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes.. Appl Environ Microbiol. 71(11):6870-7.\par \par Hinds T, Sandler SJ.\'a0 2004.\'a0\'a0Allele specific synthetic lethality between priC and dnaAts alleles at the permissive temperature of 30 degrees C in E. coli K-12.. BMC Microbiol. 4:47.\par \par Holmes DE, Nevin KP, Lovley DR.\'a0 2004.\'a0\'a0Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.. Int J Syst Evol Microbiol. 54(Pt 5):1591-9.\par \par Lovley DR, Holmes DE, Nevin KP.\'a0 2004.\'a0\'a0Dissimilatory Fe(III) and Mn(IV) reduction.. Adv Microb Physiol. 49:219-86.\par \par Holmes DE, Bond DR, Lovley DR.\'a0 2004.\'a0\'a0Electron transfer by Desulfobulbus propionicus to Fe(III) and graphite electrodes.. Appl Environ Microbiol. 70(2):1234-7.\par \par Holmes DE, Nevin KP, Lovley DR.\'a0 2004.\'a0\'a0In situ expression of nifD in Geobacteraceae in subsurface sediments.. 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