Brown AR, Gordon RA, Hyland SN, M Siegrist S, Grimes CL.  2020.  Chemical Biology Tools for Examining the Bacterial Cell Wall.. Cell Chem Biol. 27(8):1052-1062.

Kavunja HW, Biegas KJ, Banahene N, Stewart JA, Piligian BF, Groenevelt JM, Sein CE, Morita YS, Niederweis M, M Siegrist S et al..  2020.  Photoactivatable Glycolipid Probes for Identifying Mycolate-Protein Interactions in Live Mycobacteria.. J Am Chem Soc. 142(17):7725-7731.

Filman DJ, Marino SF, Ward JE, Yang L, Mester Z, Bullitt E, Lovley DR, Strauss M.  2019.  Cryo-EM reveals the structural basis of long-range electron transport in a cytochrome-based bacterial nanowire.. Commun Biol. 2:219.

Fiolek TJ, Banahene N, Kavunja HW, Holmes NJ, Rylski AK, Pohane AArunrao, M Siegrist S, Swarts BM.  2019.  Engineering the Mycomembrane of Live Mycobacteria with an Expanded Set of Trehalose Monomycolate Analogues.. Chembiochem. 20(10):1282-1291.

Concepción-Acevedo J, Miller JC, Boucher MJ, Klingbeil MM.  2018.  Cell cycle localization dynamics of mitochondrial DNA polymerase IC in African trypanosomes.. Mol Biol Cell. 29(21):2540-2552.

Sun Y-L, Tang H-Y, Ribbe A, Duzhko V, Woodard TL, Ward JE, Bai Y, Nevin KP, Nonnenmann SS, Russell T et al..  2018.  Conductive Composite Materials Fabricated from Microbially Produced Protein Nanowires.. Small. 14(44):e1802624.

Butler CS, Lovley DR.  2016.  How to Sustainably Feed a Microbe: Strategies for Biological Production of Carbon-Based Commodities with Renewable Electricity.. Front Microbiol. 7:1879.

Stewart LC, Llewellyn JG, Butterfield DA, Lilley MD, Holden JF.  2016.  Hydrogen and thiosulfate limits for growth of a thermophilic, autotrophic Desulfurobacterium species from a deep-sea hydrothermal vent.. Environ Microbiol Rep. 8(2):196-200.

M Siegrist S, Aditham AK, Espaillat A, Cameron TA, Whiteside SA, Cava F, Portnoy DA, Bertozzi CR.  2015.  Host Actin Polymerization Tunes the Cell Division Cycle of an Intracellular Pathogen.. Cell Rep. 

M Siegrist S, Swarts BM, Fox DM, Lim SAn, Bertozzi CR.  2015.  Illumination of growth, division and secretion by metabolic labeling of the bacterial cell surface.. FEMS Microbiol Rev. 39(2):184-202.

DeAngelis KM, Pold G, Topcuoglu B, van Diepen L, Blanchard J, Melillo J, Frey S.  2015.  Long-term warming drives loss of dominant taxa and rRNA copy number among soil bacteria.. Frontiers in Microbiology. 

Boguslawski KM, Hill PA, Griffith KL.  2015.  Novel mechanisms of controlling the activities of the transcription factors Spo0A and ComA by the plasmid-encoded quorum sensing regulators Rap60-Phr60 in Bacillus subtilis.. Mol Microbiol. 

Muller M, Hutin S, Marigold O, Li KH, Burlingame A, Glaunsinger BA.  2015.  A Ribonucleoprotein Complex Protects the Interleukin-6 mRNA from Degradation by Distinct Herpesviral Endonucleases. PLOS Pathogens. 11:e1004899.

Giddings CGS, Nevin KP, Woodward T, Lovley DR, Butler CS.  2015.  Simplifying microbial electrosynthesis reactor design.. Front Microbiol. 6:468.

Baek K, Wang M, McKeever R, Rieber K, Park C, Nüsslein K.  2014.  Biodegradation of low concentrations of 1,2-dibromoethane in groundwater is enhanced by phenol.. Appl Microbiol Biotechnol. 98(3):1329-38.

Muller M, Demeret C.  2014.  CCHCR1 Interacts Specifically with the E2 Protein of Human Papillomavirus Type 16 on a Surface Overlapping BRD4 Binding. PLoS ONE. 9:e92581.

Zhang T, Tremblay P-L, Chaurasia AK, Smith JA, Bain TS, Lovley DR.  2014.  Identification of genes specifically required for the anaerobic metabolism of benzene in Geobacter metallireducens.. Front Microbiol. 5:245.

Shieh P, M Siegrist S, Cullen AJ, Bertozzi CR.  2014.  Imaging bacterial peptidoglycan with near-infrared fluorogenic azide probes.. Proc Natl Acad Sci U S A. 111(15):5456-61.

Banerjee A, Leang C, Ueki T, Nevin KP, Lovley DR.  2014.  Lactose-inducible system for metabolic engineering of Clostridium ljungdahlii.. Appl Environ Microbiol. 80(8):2410-6.

Paula FS, Rodrigues JLM, Zhou J, Wu L, Mueller RC, Mirza BS, Bohannan BJM, Nüsslein K, Deng Y, Tiedje JM et al..  2014.  Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities.. Mol Ecol. 23(12):2988-99.

Mueller RC, Paula FS, Mirza BS, Rodrigues JLM, Nüsslein K, Bohannan BJM.  2014.  Links between plant and fungal communities across a deforestation chronosequence in the Amazon rainforest.. ISME J. 8(7):1548-50.

T Lin J, Breves EA, Dyar MD, Eecke HCVer, Jamieson JW, Holden JF.  2014.  Magnetite formation from ferrihydrite by hyperthermophilic archaea from Endeavour Segment, Juan de Fuca Ridge hydrothermal vent chimneys.. Geobiology. 12(3):200-11.

M Siegrist S, Bertozzi CR.  2014.  Mycobacterial lipid logic.. Cell Host Microbe. 15(1):1-2.

Mirza BS, Potisap C, Nüsslein K, Bohannan BJM, Rodrigues JLM.  2014.  Response of free-living nitrogen-fixing microorganisms to land use change in the Amazon rainforest.. Appl Environ Microbiol. 80(1):281-8.

Meniche X, Otten R, M Siegrist S, Baer CE, Murphy KC, Bertozzi CR, Sassetti CM.  2014.  Subpolar addition of new cell wall is directed by DivIVA in mycobacteria.. Proc Natl Acad Sci U S A. 111(31):E3243-51.

Zhang T, Bain TS, Barlett MA, Dar SA, Snoeyenbos-West OL, Nevin KP, Lovley DR.  2014.  Sulfur oxidation to sulfate coupled with electron transfer to electrodes by Desulfuromonas strain TZ1.. Microbiology (Reading). 160(Pt 1):123-129.

Zhang T, Tremblay P-L, Chaurasia AKumar, Smith JA, Bain TS, Lovley DR.  2013.  Anaerobic benzene oxidation via phenol in Geobacter metallireducens.. Appl Environ Microbiol. 79(24):7800-6.

Williams KH, Bargar JR, Lloyd JR, Lovley DR.  2013.  Bioremediation of uranium-contaminated groundwater: a systems approach to subsurface biogeochemistry.. Curr Opin Biotechnol. 24(3):489-97.

Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Juárez K, Cho B-K, Elkins JG, Nevin KP, Barrett CL et al..  2013.  Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.. Nat Commun. 4:1755.

Rodrigues JLM, Pellizari VH, Mueller R, Baek K, Jesus Eda C, Paula FS, Mirza B, Hamaoui GS, Tsai SMui, Feigl B et al..  2013.  Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities.. Proc Natl Acad Sci U S A. 110(3):988-93.

M Siegrist S, Whiteside S, Jewett JC, Aditham A, Cava F, Bertozzi CR.  2013.  (D)-Amino acid chemical reporters reveal peptidoglycan dynamics of an intracellular pathogen.. ACS Chem Biol. 8(3):500-5.

Lizik W, Im J, Semrau JD, Barcelona MJ.  2013.  A field trial of nutrient stimulation of methanotrophs to reduce greenhouse gas emissions from landfill cover soils.. J Air Waste Manag Assoc. 63(3):300-9.

Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LAnn, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR et al..  2013.  Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.. PLoS One. 8(3):e57819.

Ver Eecke HC, Akerman NH, Huber JA, Butterfield DA, Holden JF.  2013.  Growth kinetics and energetics of a deep-sea hyperthermophilic methanogen under varying environmental conditions.. Environ Microbiol Rep. 5(5):665-71.

Vriezen JAC, de Bruijn FJ, Nüsslein K.  2013.  Identification and characterization of a NaCl-responsive genetic locus involved in survival during desiccation in Sinorhizobium meliloti.. Appl Environ Microbiol. 79(18):5693-700.

Holmes DE, Giloteaux L, Barlett M, Chavan MA, Smith JA, Williams KH, Wilkins M, Long P, Lovley DR.  2013.  Molecular analysis of the in situ growth rates of subsurface Geobacter species.. Appl Environ Microbiol. 79(5):1646-53.

Hatzios SK, Baer CE, Rustad TR, M Siegrist S, Pang JM, Ortega C, Alber T, Grundner C, Sherman DR, Bertozzi CR.  2013.  Osmosensory signaling in Mycobacterium tuberculosis mediated by a eukaryotic-like Ser/Thr protein kinase.. Proc Natl Acad Sci U S A. 110(52):E5069-77.

Benmerzouga I, Concepción-Acevedo J, Kim H-S, Vandoros AV, Cross GAM, Klingbeil MM, Li B.  2013.  Trypanosoma brucei Orc1 is essential for nuclear DNA replication and affects both VSG silencing and VSG switching.. Mol Microbiol. 87(1):196-210.

Zhang T, Bain TS, Nevin KP, Barlett MA, Lovley DR.  2012.  Anaerobic benzene oxidation by Geobacter species.. Appl Environ Microbiol. 78(23):8304-10.

Deangelis KM, Fortney JL, Borglin S, Silver WL, Simmons BA, Hazen TC.  2012.  Anaerobic decomposition of switchgrass by tropical soil-derived feedstock-adapted consortia.. MBio. 3(1)

Burand JP, Kim W, Afonso CL, Tulman ER, Kutish GF, Lu Z, Rock DL.  2012.  Analysis of the genome of the sexually transmitted insect virus Helicoverpa zea nudivirus 2.. Viruses. 4(1):28-61.

Borglin S, Joyner D, Deangelis KM, Khudyakov J, D'haeseleer P, Joachimiak MP, Hazen T.  2012.  Application of phenotypic microarrays to environmental microbiology.. Curr Opin Biotechnol. 23(1):41-8.

McKeever R, Sheppard D, Nüsslein K, Baek K-H, Rieber K, Ergas SJ, Forbes R, Hilyard M, Park C.  2012.  Biodegradation of ethylene dibromide (1,2-dibromoethane [EDB]) in microcosms simulating in situ and biostimulated conditions.. J Hazard Mater. 209-210:92-8.

Butler JE, Young ND, Aklujkar M, Lovley DR.  2012.  Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production.. BMC Genomics. 13:471.

Vriezen J A, de Bruijn FJ, Nüsslein KR.  2012.  Desiccation induces viable but Non-Culturable cells in Sinorhizobium meliloti 1021.. AMB Express. 2(1):6.

Blanco M B, Elfawal MA, Durden LA, Beati L, Xu G, Godfrey LR, Rich SM.  2012.  Genetic diversity of ixodid ticks parasitizing eastern mouse and dwarf lemurs in Madagascar, with descriptions of the larva, nymph and male of Ixodes lemuris (Acari: Ixodidae).. J Parasitol. 

Aklujkar M, Haveman SA, DiDonato R, Chertkov O, Han CS, Land ML, Brown P, Lovley DR.  2012.  The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.. BMC Genomics. 13:690.

Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP.  2012.  Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus.. Proc Natl Acad Sci U S A. 109(32):E2173-82.

Ver Eecke HC, Butterfield DA, Huber JA, Lilley MD, Olson EJ, Roe KK, Evans LJ, Merkel AY, Cantin HV, Holden JF.  2012.  Hydrogen-limited growth of hyperthermophilic methanogens at deep-sea hydrothermal vents.. Proc Natl Acad Sci U S A. 109(34):13674-9.

Muller M, Jacob Y, Jones L, Weiss A, Brino L, Chantier T, Lotteau V, Favre M, Demeret C.  2012.  Large Scale Genotype Comparison of Human Papillomavirus E2-Host Interaction Networks Provides New Insights for E2 Molecular Functions. {PLoS} Pathogens. 8:e1002761.

Baek K, McKeever R, Rieber K, Sheppard D, Park C, Ergas SJ, Nüsslein K.  2012.  Molecular approach to evaluate biostimulation of 1,2-dibromoethane in contaminated groundwater.. Bioresour Technol. 123C:207-213.

Boles AR, Conneely T, McKeever R, Nixon P, Nüsslein KR, Ergas SJ.  2012.  Performance of a pilot-scale packed bed reactor for perchlorate reduction using a sulfur oxidizing bacterial consortium.. Biotechnol Bioeng. 109(3):637-46.

Swarts BM, Holsclaw CM, Jewett JC, Alber M, Fox DM, M Siegrist S, Leary JA, Kalscheuer R, Bertozzi CR.  2012.  Probing the mycobacterial trehalome with bioorthogonal chemistry.. J Am Chem Soc. 134(39):16123-6.

Burand JP, Hunter WB.  2012.  RNAi: Future in insect management.. J Invertebr Pathol. 

Yoon S, Im J, Bandow N, Dispirito AA, Semrau JD.  2011.  Constitutive expression of pMMO by Methylocystis strain SB2 when grown on multi-carbon substrates: implications for biodegradation of chlorinated ethenes.. Environ Microbiol Rep. 3(2):182-8.

Tremblay P-L, Summers ZM, Glaven RH, Nevin KP, Zengler K, Barrett CL, Qiu Y, Palsson BO, Lovley DR.  2011.  A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.. Environ Microbiol. 13(1):13-23.

Im J, Lee S-W, Bodrossy L, Barcelona MJ, Semrau JD.  2011.  Field application of nitrogen and phenylacetylene to mitigate greenhouse gas emissions from landfill cover soils: effects on microbial community structure.. Appl Microbiol Biotechnol. 89(1):189-200.

Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru A-E et al..  2011.  Geobacter: the microbe electric's physiology, ecology, and practical applications.. Adv Microb Physiol. 59:1-100.

Burand JP, Kim W, Welch A, Elkinton JS.  2011.  Identification of a nucleopolyhedrovirus in winter moth populations from Massachusetts.. J Invertebr Pathol. 108(3):217-9.

Mackelprang R, Waldrop MP, Deangelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK.  2011.  Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.. Nature. 480(7377):368-71.

Deangelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME et al..  2011.  PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.. Appl Environ Microbiol. 77(18):6313-22.

Prilusky J, Hodis E, Canner D, Decatur WA, Oberholser K, Martz E, Berchanski A, Harel M, Sussman JL.  2011.  Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.. J Struct Biol. 175(2):244-52.

Springer AL, Bruhn DF, Kinzel KW, Rosenthal NF, Zukas R, Klingbeil MM.  2011.  Silencing of a putative inner arm dynein heavy chain results in flagellar immotility in Trypanosoma brucei.. Mol Biochem Parasitol. 175(1):68-75.

Marceau AH, Bahng S, Massoni SC, George NP, Sandler SJ, Marians KJ, Keck JL.  2011.  Structure of the SSB-DNA polymerase III interface and its role in DNA replication.. EMBO J. 30(20):4236-47.

Johne R, Buck CB, Allander T, Atwood WJ, Garcea RL, Imperiale MJ, Major EO, Ramqvist T, Norkin LC.  2011.  Taxonomical developments in the family Polyomaviridae.. Arch Virol. 156(9):1627-34.

Bruhn DF, Sammartino MP, Klingbeil MM.  2011.  Three mitochondrial DNA polymerases are essential for kinetoplast DNA replication and survival of bloodstream form Trypanosoma brucei.. Eukaryot Cell. 10(6):734-43.

Callister SJ, Wilkins MJ, Nicora CD, Williams KH, Banfield JF, VerBerkmoes NC, Hettich RL, N'Guessan L, Mouser PJ, Elifantz H et al..  2010.  Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles.. Environ Sci Technol. 44(23):8897-903.

Sun J, Haveman SA, Bui O, Fahland TR, Lovley DR.  2010.  Constraint-based modeling analysis of the metabolism of two Pelobacter species.. BMC Syst Biol. 4:174.

Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N.  2010.  ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.. Nucleic Acids Res. 38(Web Server issue):W529-33.

Nagarajan H, Butler JE, Klimes A, Qiu Y, Zengler K, Ward J, Young ND, Methé BA, Palsson BØ, Lovley DR et al..  2010.  De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads.. PLoS One. 5(6):e10922.

Butler JE, Young ND, Lovley DR.  2010.  Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes.. BMC Genomics. 11:40.

Krushkal J, Juárez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T.  2010.  Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.. Gene. 469(1-2):31-44.

Bruhn DF, Mozeleski B, Falkin L, Klingbeil MM.  2010.  Mitochondrial DNA polymerase POLIB is essential for minicircle DNA replication in African trypanosomes.. Mol Microbiol. 75(6):1414-25.

Klimes A, Franks AE, Glaven RH, Tran H, Barrett CL, Qiu Y, Zengler K, Lovley DR.  2010.  Production of pilus-like filaments in Geobacter sulfurreducens in the absence of the type IV pilin protein PilA.. FEMS Microbiol Lett. 310(1):62-8.

Morita YS, Yamaryo-Botte Y, Miyanagi K, Callaghan JM, Patterson JH, Crellin PK, Coppel RL, Billman-Jacobe H, Kinoshita T, McConville MJ.  2010.  Stress-induced synthesis of phosphatidylinositol 3-phosphate in mycobacteria.. J Biol Chem. 285(22):16643-50.

Krushkal J, Leang C, Barbe JF, Qu Y, Yan B, Puljic M, Adkins RM, Lovley DR.  2009.  Diversity of promoter elements in a Geobacter sulfurreducens mutant adapted to disruption in electron transfer.. Funct Integr Genomics. 9(1):15-25.

Lee S-W, Im J, Dispirito AA, Bodrossy L, Barcelona MJ, Semrau JD.  2009.  Effect of nutrient and selective inhibitor amendments on methane oxidation, nitrous oxide production, and key gene presence and expression in landfill cover soils: characterization of the role of methanotrophs, nitrifiers, and denitrifiers.. Appl Microbiol Biotechnol. 85(2):389-403.

Butler JE, Young ND, Lovley DR.  2009.  Evolution from a respiratory ancestor to fill syntrophic and fermentative niches: comparative fenomics of six Geobacteraceae species.. BMC Genomics. 10:103.

Junglen S, Kurth A, Kuehl H, Quan P-L, Ellerbrok H, Pauli G, Nitsche A, Nunn C, Rich SM, Lipkin WI et al..  2009.  Examining landscape factors influencing relative distribution of mosquito genera and frequency of virus infection.. Ecohealth. 6(2):239-49.

Risso C, Sun J, Zhuang K, Mahadevan R, DeBoy R, Ismail W, Shrivastava S, Huot H, Kothari S, Daugherty S et al..  2009.  Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.. BMC Genomics. 10:447.

Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R.  2009.  Genome-scale constraint-based modeling of Geobacter metallireducens.. BMC Syst Biol. 3:15.

Qu Y, Brown P, Barbe JF, Puljic M, Merino E, Adkins RM, Lovley DR, Krushkal J.  2009.  GSEL version 2, an online genome-wide query system of operon organization and regulatory sequence elements of Geobacter sulfurreducens.. OMICS. 13(5):439-49.

Abd-Alla AMM, Vlak JM, Bergoin M, Maruniak JE, Parker A, Burand JP, Jehle JA, Boucias DG.  2009.  Hytrosaviridae: a proposal for classification and nomenclature of a new insect virus family.. Arch Virol. 154(6):909-18.

M Siegrist S, Unnikrishnan M, McConnell MJ, Borowsky M, Cheng T-Y, Siddiqi N, Fortune SM, D Moody B, Rubin EJ.  2009.  Mycobacterial Esx-3 is required for mycobactin-mediated iron acquisition.. Proc Natl Acad Sci U S A. 106(44):18792-7.

Rich SM, Leendertz FH, Xu G, LeBreton M, Djoko CF, Aminake MN, Takang EE, Diffo JLD, Pike BL, Rosenthal BM et al..  2009.  The origin of malignant malaria.. Proc Natl Acad Sci U S A. 106(35):14902-7.

Welch A, Drummond F, Tewari S, Averill A, Burand JP.  2009.  Presence and prevalence of viruses in local and migratory honeybees (Apis mellifera) in Massachusetts.. Appl Environ Microbiol. 75(24):7862-5.

Wilkins MJ, VerBerkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan LA, Thomas BC, Nicora CD, Shah MB et al..  2009.  Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.. Appl Environ Microbiol. 75(20):6591-9.

Deangelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK.  2009.  Selective progressive response of soil microbial community to wild oat roots.. ISME J. 3(2):168-78.

Garcia-Maruniak A, Abd-Alla AMM, Salem TZ, Parker AG, Lietze V-U, van Oers MM, Maruniak JE, Kim W, Burand JP, Cousserans F et al..  2009.  Two viruses that cause salivary gland hypertrophy in Glossina pallidipes and Musca domestica are related and form a distinct phylogenetic clade.. J Gen Virol. 90(Pt 2):334-46.

Izallalen M, Mahadevan R, Burgard A, Postier B, DiDonato R, Sun J, Schilling CH, Lovley DR.  2008.  Geobacter sulfurreducens strain engineered for increased rates of respiration.. Metab Eng. 10(5):267-75.

Crellin PK, Kovacevic S, Martin KL, Brammananth R, Morita YS, Billman-Jacobe H, McConville MJ, Coppel RL.  2008.  Mutations in pimE restore lipoarabinomannan synthesis and growth in a Mycobacterium smegmatis lpqW mutant.. J Bacteriol. 190(10):3690-9.

Butler JE, He Q, Nevin KP, He Z, Zhou J, Lovley DR.  2007.  Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site.. BMC Genomics. 8:180.

Shelobolina ES, Nevin KP, Blakeney-Hayward JD, Johnsen CV, Plaia TW, Krader P, Woodard T, Holmes DE, Vanpraagh C G, Lovley DR.  2007.  Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.. Int J Syst Evol Microbiol. 57(Pt 1):126-35.

Lopper M, Boonsombat R, Sandler SJ, Keck JL.  2007.  A hand-off mechanism for primosome assembly in replication restart.. Mol Cell. 26(6):781-93.

Shelobolina ES, Coppi MV, Korenevsky AA, DiDonato LN, Sullivan SA, Konishi H, Xu H, Leang C, Butler JE, Kim B-C et al..  2007.  Importance of c-Type cytochromes for U(VI) reduction by Geobacter sulfurreducens.. BMC Microbiol. 7:16.

Mayrose I, Penn O, Erez E, Rubinstein ND, Shlomi T, Freund N T, Bublil EM, Ruppin E, Sharan R, Gershoni JM et al..  2007.  Pepitope: epitope mapping from affinity-selected peptides.. Bioinformatics. 23(23):3244-6.

Vriezen J A, de Bruijn FJ, Nüsslein K.  2007.  Responses of rhizobia to desiccation in relation to osmotic stress, oxygen, and temperature.. Appl Environ Microbiol. 73(11):3451-9.

Stern A, Doron-Faigenboim A, Erez E, Martz E, Bacharach E, Pupko T.  2007.  Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach.. Nucleic Acids Res. 35(Web Server issue):W506-11.

Ahrendt AJ, Tollaksen SL, Lindberg C, Zhu W, Yates JR, Nevin KP, Babnigg G, Lovley DR, Giometti CS.  2007.  Steady state protein levels in Geobacter metallireducens grown with iron (III) citrate or nitrate as terminal electron acceptor.. Proteomics. 7(22):4148-57.

Mahadevan R, Bond DR, Butler JE, Esteve-Nuñez A, Coppi MV, Palsson BO, Schilling CH, Lovley DR.  2006.  Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.. Appl Environ Microbiol. 72(2):1558-68.

Vriezen JAC, de Bruijn FJ, Nüsslein K.  2006.  Desiccation responses and survival of Sinorhizobium meliloti USDA 1021 in relation to growth phase, temperature, chloride and sulfate availability.. Lett Appl Microbiol. 42(2):172-8.

Butler JE, Glaven RH, Esteve-Núñez A, Núñez C, Shelobolina ES, Bond DR, Lovley DR.  2006.  Genetic characterization of a single bifunctional enzyme for fumarate reduction and succinate oxidation in Geobacter sulfurreducens and engineering of fumarate reduction in Geobacter metallireducens.. J Bacteriol. 188(2):450-5.

Hancock LC, Behta RP, Lopes JM.  2006.  Genomic analysis of the Opi- phenotype.. Genetics. 173(2):621-34.

Kovacevic S, Anderson D, Morita YS, Patterson J, Haites R, McMillan BNI, Coppel R, McConville MJ, Billman-Jacobe H.  2006.  Identification of a novel protein with a role in lipoarabinomannan biosynthesis in mycobacteria.. J Biol Chem. 281(14):9011-7.

Boonsombat R, Yeh S-P, Milne A, Sandler SJ.  2006.  A novel dnaC mutation that suppresses priB rep mutant phenotypes in Escherichia coli K-12.. Mol Microbiol. 60(4):973-83.

Morita YS, Sena CBC, Waller RF, Kurokawa K, Sernee FM, Nakatani F, Haites RE, Billman-Jacobe H, McConville MJ, Maeda Y et al..  2006.  PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of phosphatidylinositol mannoside in mycobacteria.. J Biol Chem. 281(35):25143-55.

Bond DR, Mester T, Nesbø CL, Izquierdo-Lopez AV, Collart FL, Lovley DR.  2005.  Characterization of citrate synthase from Geobacter sulfurreducens and evidence for a family of citrate synthases similar to those of eukaryotes throughout the Geobacteraceae.. Appl Environ Microbiol. 71(7):3858-65.

Griffith KL, Becker SM, Wolf RE.  2005.  Characterization of TetD as a transcriptional activator of a subset of genes of the Escherichia coli SoxS/MarA/Rob regulon.. Mol Microbiol. 56(4):1103-17.

Morita YS, Velasquez R, Taig E, Waller RF, Patterson JH, Tull D, Williams SJ, Billman-Jacobe H, McConville MJ.  2005.  Compartmentalization of lipid biosynthesis in mycobacteria.. J Biol Chem. 280(22):21645-52.

Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, Pupko T, Ben-Tal N.  2005.  ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.. Nucleic Acids Res. 33(Web Server issue):W299-302.

Methé BA, Webster J, Nevin K, Butler J, Lovley DR.  2005.  DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens.. Appl Environ Microbiol. 71(5):2530-8.

Bond DR, Lovley DR.  2005.  Evidence for involvement of an electron shuttle in electricity generation by Geothrix fermentans.. Appl Environ Microbiol. 71(4):2186-9.

Haites RE, Morita YS, McConville MJ, Billman-Jacobe H.  2005.  Function of phosphatidylinositol in mycobacteria.. J Biol Chem. 280(12):10981-7.

Gardocki ME, Bakewell M, Kamath D, Robinson K, Borovicka K, Lopes JM.  2005.  Genomic analysis of PIS1 gene expression.. Eukaryot Cell. 4(3):604-14.

Burand JP, Tan W, Kim W, Nojima S, Roelofs W.  2005.  Infection with the insect virus Hz-2v alters mating behavior and pheromone production in female Helicoverpa zea moths.. J Insect Sci. 5:6.

Renzette N, Gumlaw N, Nordman JT, Krieger M, Yeh S-P, Long E, Centore R, Boonsombat R, Sandler SJ.  2005.  Localization of RecA in Escherichia coli K-12 using RecA-GFP.. Mol Microbiol. 57(4):1074-85.

Holmes DE, Bond DR, Lovley DR.  2004.  Electron transfer by Desulfobulbus propionicus to Fe(III) and graphite electrodes.. Appl Environ Microbiol. 70(2):1234-7.

Gregory KB, Bond DR, Lovley DR.  2004.  Graphite electrodes as electron donors for anaerobic respiration.. Environ Microbiol. 6(6):596-604.

Burand JP, Rallis CP, Tan W.  2004.  Horizontal transmission of Hz-2V by virus infected Helicoverpa zea moths.. J Invertebr Pathol. 85(2):128-31.

Burand JP, Rallis CP.  2004.  In vivo dose-response of insects to Hz-2V infection.. Virol J. 1:15.

Butler JE, Kaufmann F, Coppi MV, Núñez C, Lovley DR.  2004.  MacA, a diheme c-type cytochrome involved in Fe(III) reduction by Geobacter sulfurreducens.. J Bacteriol. 186(12):4042-5.

Holmes DE, Bond DR, O'Neil RA, Reimers CE, Tender LR, Lovley DR.  2004.  Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments.. Microb Ecol. 48(2):178-90.

Holmes DE, Nicoll JS, Bond DR, Lovley DR.  2004.  Potential role of a novel psychrotolerant member of the family Geobacteraceae, Geopsychrobacter electrodiphilus gen. nov., sp. nov., in electricity production by a marine sediment fuel cell.. Appl Environ Microbiol. 70(10):6023-30.

Gov Y, Borovok I, Korem M, Singh VK, Jayaswal RK, Wilkinson BJ, Rich SM, Balaban N.  2004.  Quorum sensing in Staphylococci is regulated via phosphorylation of three conserved histidine residues.. J Biol Chem. 279(15):14665-72.

Vinogradov E, Korenevsky A, Lovley DR, Beveridge TJ.  2004.  The structure of the core region of the lipopolysaccharide from Geobacter sulfurreducens.. Carbohydr Res. 339(18):2901-4.

Glaser F, Pupko T, Paz I, Bell RE, Bechor-Shental D, Martz E, Ben-Tal N.  2003.  ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information.. Bioinformatics. 19(1):163-4.

Bond DR, Lovley DR.  2003.  Electricity production by Geobacter sulfurreducens attached to electrodes.. Appl Environ Microbiol. 69(3):1548-55.

Methé BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ et al..  2003.  Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.. Science. 302(5652):1967-9.

Jara M, Núñez C, Campoy S, Fernández de Henestrosa AR, Lovley DR, Barbé J.  2003.  Geobacter sulfurreducens has two autoregulated lexA genes whose products do not bind the recA promoter: differing responses of lexA and recA to DNA damage.. J Bacteriol. 185(8):2493-502.

Kashefi K, Holmes DE, Baross JA, Lovley DR.  2003.  Thermophily in the Geobacteraceae: Geothermobacter ehrlichii gen. nov., sp. nov., a novel thermophilic member of the Geobacteraceae from the "Bag City" hydrothermal vent.. Appl Environ Microbiol. 69(5):2985-93.

Burke WD, Malik HS, Rich SM, Eickbush TH.  2002.  Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lamblia.. Mol Biol Evol. 19(5):619-30.

Bond DR, Holmes DE, Tender LM, Lovley DR.  2002.  Electrode-reducing microorganisms that harvest energy from marine sediments.. Science. 295(5554):483-5.

Klapper L, McKnight DM, Fulton RJ, Blunt-Harris EL, Nevin KP, Lovley DR, Hatcher PG.  2002.  Fulvic acid oxidation state detection using fluorescence spectroscopy.. Environ Sci Technol. 36(14):3170-5.

Tender LM, Reimers CE, Stecher HA, Holmes DE, Bond DR, Lowy DA, Pilobello K, Fertig SJ, Lovley DR.  2002.  Harnessing microbially generated power on the seafloor.. Nat Biotechnol. 20(8):821-5.

Chapelle FH, O'Neill K, Bradley PM, Methé BA, Ciufo SA, Knobel LRL, Lovley DR.  2002.  A hydrogen-based subsurface microbial community dominated by methanogens.. Nature. 415(6869):312-5.

Rallis CP, Burand JP.  2002.  Pathology and ultrastructure of Hz-2V infection in the agonadal female corn earworm, Helicoverpa zea.. J Invertebr Pathol. 81(1):33-44.

Rallis CP, Burand JP.  2002.  Pathology and ultrastructure of the insect virus, Hz-2V, infecting agonadal male corn earworms, Helicoverpa zea.. J Invertebr Pathol. 80(2):81-9.

Chapelle FH, Bradley PM, Lovley DR, O'Neill K, Landmeyer JE.  2002.  Rapid evolution of redox processes in a petroleum hydrocarbon-contaminated aquifer.. Ground Water. 40(4):353-60.

Bond DR, Lovley DR.  2002.  Reduction of Fe(III) oxide by methanogens in the presence and absence of extracellular quinones.. Environ Microbiol. 4(2):115-24.

Rich SM, Sawyer SA, Barbour AG.  2001.  Antigen polymorphism in Borrelia hermsii, a clonal pathogenic bacterium.. Proc Natl Acad Sci U S A. 98(26):15038-43.

Holden JF, Takai K, Summit M, Bolton S, Zyskowski J, Baross JA.  2001.  Diversity among three novel groups of hyperthermophilic deep-sea Thermococcus species from three sites in the northeastern Pacific Ocean.. FEMS Microbiol Ecol. 36(1):51-60.

Coates JD, Bhupathiraju VK, Achenbach LA, Mclnerney MJ, Lovley DR.  2001.  Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers.. Int J Syst Evol Microbiol. 51(Pt 2):581-8.

Lu H, Burand JP.  2001.  Replication of the gonad-specific virus Hz-2V in Ld652Y cells mimics replication in vivo.. J Invertebr Pathol. 77(1):44-50.

Widmer G, Akiyoshi D, Buckholt MA, Feng X, Rich SM, Deary KM, Bowman CA, Xu P, Wang Y, Wang X et al..  2000.  Animal propagation and genomic survey of a genotype 1 isolate of Cryptosporidium parvum.. Mol Biochem Parasitol. 108(2):187-97.

Elkhaimi M, Kaadige MR, Kamath D, Jackson JC, Biliran H, Lopes JM.  2000.  Combinatorial regulation of phospholipid biosynthetic gene expression by the UME6, SIN3 and RPD3 genes.. Nucleic Acids Res. 28(16):3160-7.

Bazylinski DA, Dean AJ, Schüler D, Phillips EJ, Lovley DR.  2000.  N2-dependent growth and nitrogenase activity in the metal-metabolizing bacteria, Geobacter and Magnetospirillum species.. Environ Microbiol. 2(3):266-73.

Lovley DR, Fraga JL, Coates JD, Blunt-Harris EL.  1999.  Humics as an electron donor for anaerobic respiration.. Environ Microbiol. 1(1):89-98.

Lloyd JR, Blunt-Harris EL, Lovley DR.  1999.  The periplasmic 9.6-kilodalton c-type cytochrome of Geobacter sulfurreducens is not an electron shuttle to Fe(III).. J Bacteriol. 181(24):7647-9.

Lovley DR, Blunt-Harris EL.  1999.  Role of humic-bound iron as an electron transfer agent in dissimilatory Fe(III) reduction.. Appl Environ Microbiol. 65(9):4252-4.

Stolz JF, Ellis DJ, Blum JS, Ahmann D, Lovley DR, Oremland RS.  1999.  Sulfurospirillum barnesii sp. nov. and Sulfurospirillum arsenophilum sp. nov., new members of the Sulfurospirillum clade of the epsilon Proteobacteria.. Int J Syst Bacteriol. 49 Pt 3:1177-80.

Bradley PM, Chapelle FH, Lovley DR.  1998.  Humic acids as electron acceptors for anaerobic microbial oxidation of vinyl chloride and dichloroethene.. Appl Environ Microbiol. 64(8):3102-5.

Vargas M, Kashefi K, Blunt-Harris EL, Lovley DR.  1998.  Microbiological evidence for Fe(III) reduction on early Earth.. Nature. 395(6697):65-7.

Seitz EM, Brockman JP, Sandler SJ, Clark AJ, Kowalczykowski SC.  1998.  RadA protein is an archaeal RecA protein homolog that catalyzes DNA strand exchange.. Genes Dev. 12(9):1248-53.

Coates JD, Ellis DJ, Blunt-Harris EL, Gaw CV, Roden EE, Lovley DR.  1998.  Recovery of humic-reducing bacteria from a diversity of environments.. Appl Environ Microbiol. 64(4):1504-9.

Brendel V, Brocchieri L, Sandler SJ, Clark AJ, Karlin S.  1997.  Evolutionary comparisons of RecA-like proteins across all major kingdoms of living organisms.. J Mol Evol. 44(5):528-41.

Dangoria NS, Breau WC, Anderson HA, Cishek DM, Norkin LC.  1996.  Extracellular simian virus 40 induces an ERK/MAP kinase-independent signalling pathway that activates primary response genes and promotes virus entry.. J Gen Virol. 77 ( Pt 9):2173-82.

Boyd EF, Hill CW, Rich SM, Hartl DL.  1996.  Mosaic structure of plasmids from natural populations of Escherichia coli.. Genetics. 143(3):1091-100.

Baross JA, Holden JF.  1996.  Overview of hyperthermophiles and their heat-shock proteins.. Adv Protein Chem. 48:1-34.

Laverman AM, Blum JS, Schaefer JK, Phillips E, Lovley DR, Oremland RS.  1995.  Growth of Strain SES-3 with Arsenate and Other Diverse Electron Acceptors.. Appl Environ Microbiol. 61(10):3556-61.

Holden JF, Baross JA.  1993.  Enhanced thermotolerance and temperature-induced changes in protein composition in the hyperthermophilic archaeon ES4.. J Bacteriol. 175(10):2839-43.

Breau WC, Atwood WJ, Norkin LC.  1992.  Class I major histocompatibility proteins are an essential component of the simian virus 40 receptor.. J Virol. 66(4):2037-45.

Caccavo F, Blakemore RP, Lovley DR.  1992.  A Hydrogen-Oxidizing, Fe(III)-Reducing Microorganism from the Great Bay Estuary, New Hampshire.. Appl Environ Microbiol. 58(10):3211-6.

Clark AJ, Sandler SJ, Willis DK, Chu CC, Blanar MA, Lovett ST.  1984.  Genes of the RecE and RecF pathways of conjugational recombination in Escherichia coli.. Cold Spring Harb Symp Quant Biol. 49:453-62.

Blanar MA, Sandler SJ, Armengod ME, Ream LW, Clark AJ.  1984.  Molecular analysis of the recF gene of Escherichia coli.. Proc Natl Acad Sci U S A. 81(15):4622-6.

Misra AL, Bloch R, Vardy J, Mulé SJ, Verebely K.  1976.  Disposition of (15,16-3H)naltrexone in the central nervous system of the rat.. Drug Metab Dispos. 4(3):276-80.

Bose KS, Sarma RH.  1975.  Delineation of the intimate details of the backbone conformation of pyridine nucleotide coenzymes in aqueous solution.. Biochem Biophys Res Commun. 66(4):1173-9.

Schmoldt A, Benthe HF, Haberland G.  1975.  Digitoxin metabolism by rat liver microsomes.. Biochem Pharmacol. 24(17):1639-41.

Flohr H, Breull W.  1975.  Effect of etafenone on total and regional myocardial blood flow.. Arzneimittelforschung. 25(9):1400-3.

Kahn T, Bosch J, Levitt MF, Goldstein MH.  1975.  Effect of sodium nitrate loading on electrolyte transport by the renal tubule.. Am J Physiol. 229(3):746-53.

Smith RJ, Bryant RG.  1975.  Metal substitutions incarbonic anhydrase: a halide ion probe study.. Biochem Biophys Res Commun. 66(4):1281-6.

Bechtel JE, McNamara JR.  1975.  Relaxation as a factor in semantic desensitization.. J Consult Clin Psychol. 43(6):925.

Scherberger RR, Kaess H, Brückner S.  1975.  [Studies on the action of an anticholinergic agent in combination with a tranquilizer on gastric juice secretion in man].. Arzneimittelforschung. 25(9):1460-3.