@article {3127,
	title = {Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens.},
	journal = {PLoS Comput Biol},
	volume = {10},
	year = {2014},
	month = {2014 Apr},
	pages = {e1003575},
	abstract = {<p>Geobacter species are of great interest for environmental and biotechnology applications as they can carry out direct electron transfer to insoluble metals or other microorganisms and have the ability to assimilate inorganic carbon. Here, we report on the capability and key enabling metabolic machinery of Geobacter metallireducens GS-15 to carry out CO2 fixation and direct electron transfer to iron. An updated metabolic reconstruction was generated, growth screens on targeted conditions of interest were performed, and constraint-based analysis was utilized to characterize and evaluate critical pathways and reactions in G. metallireducens. The novel capability of G. metallireducens to grow autotrophically with formate and Fe(III) was predicted and subsequently validated in vivo. Additionally, the energetic cost of transferring electrons to an external electron acceptor was determined through analysis of growth experiments carried out using three different electron acceptors (Fe(III), nitrate, and fumarate) by systematically isolating and examining different parts of the electron transport chain. The updated reconstruction will serve as a knowledgebase for understanding and engineering Geobacter and similar species.</p>},
	keywords = {Carbon, Electron Transport, Energy Metabolism, Genome, Bacterial, Geobacter, Models, Biological},
	issn = {1553-7358},
	doi = {10.1371/journal.pcbi.1003575},
	author = {Feist, Adam M and Nagarajan, Harish and Rotaru, Amelia-Elena and Tremblay, Pier-Luc and Zhang, Tian and Nevin, Kelly P and Lovley, Derek R and Zengler, Karsten}
}
@article {3134,
	title = {Syntrophic growth with direct interspecies electron transfer as the primary mechanism for energy exchange.},
	journal = {Environ Microbiol Rep},
	volume = {5},
	year = {2013},
	month = {2013 Dec},
	pages = {904-10},
	abstract = {<p>Direct interspecies electron transfer (DIET) through biological electrical connections is an alternative to interspecies H2 transfer as a mechanism for electron exchange in syntrophic cultures. However, it has not previously been determined whether electrons received via DIET yield energy to support cell growth. In order to investigate this, co-cultures of Geobacter metallireducens, which can transfer electrons to wild-type G. sulfurreducens via DIET, were established with a citrate synthase-deficient G. sulfurreducens strain that can receive electrons for respiration through DIET only. In a medium with ethanol as the electron donor and fumarate as the electron acceptor, co-cultures with the citrate synthase-deficient G. sulfurreducens strain metabolized ethanol as fast as co-cultures with wild-type, but the acetate that G. metallireducens generated from ethanol oxidation accumulated. The lack of acetate metabolism resulted in less fumarate reduction and lower cell abundance of G. sulfurreducens. RNAseq analysis of transcript abundance was consistent with a lack of acetate metabolism in G. sulfurreducens and revealed gene expression levels for the uptake hydrogenase, formate dehydrogenase, the pilus-associated c-type cytochrome OmcS and pili consistent with electron transfer via DIET. These results suggest that electrons transferred via DIET can serve as the sole energy source to support anaerobic respiration.</p>},
	keywords = {Acetates, Anaerobiosis, Citrate (si)-Synthase, Cytochrome c Group, Electron Transport, Electrons, Energy Metabolism, Ethanol, Fimbriae, Bacterial, Formate Dehydrogenases, Fumarates, Geobacter, Oxidation-Reduction},
	issn = {1758-2229},
	doi = {10.1111/1758-2229.12093},
	author = {Shrestha, Pravin Malla and Rotaru, Amelia-Elena and Aklujkar, Muktak and Liu, Fanghua and Shrestha, Minita and Summers, Zarath M and Malvankar, Nikhil and Flores, Dan Carlo and Lovley, Derek R}
}
