@article {370,
	title = {Application of phenotypic microarrays to environmental microbiology.},
	journal = {Curr Opin Biotechnol},
	volume = {23},
	year = {2012},
	month = {2012 Feb},
	pages = {41-8},
	abstract = {Environmental organisms are extremely diverse and only a small fraction has been successfully cultured in the laboratory. Culture in micro wells provides a method for rapid screening of a wide variety of growth conditions and commercially available plates contain a large number of substrates, nutrient sources, and inhibitors, which can provide an assessment of the phenotype of an organism. This review describes applications of phenotype arrays to anaerobic and thermophilic microorganisms, use of the plates in stress response studies, in development of culture media for newly discovered strains, and for assessment of phenotype of environmental communities. Also discussed are considerations and challenges in data interpretation and visualization, including data normalization, statistics, and curve fitting.},
	issn = {1879-0429},
	doi = {10.1016/j.copbio.2011.12.006},
	author = {Borglin, Sharon and Joyner, Dominique and Deangelis, Kristen M and Khudyakov, Jane and D{\textquoteright}haeseleer, Patrik and Joachimiak, Marcin P and Hazen, Terry}
}
@article {371,
	title = {Complete genome sequence of "Enterobacter lignolyticus" SCF1.},
	journal = {Stand Genomic Sci},
	volume = {5},
	year = {2011},
	month = {2011 Oct 15},
	pages = {69-85},
	abstract = {In an effort to discover anaerobic bacteria capable of lignin degradation, we isolated "Enterobacter lignolyticus" SCF1 on minimal media with alkali lignin as the sole source of carbon. This organism was isolated anaerobically from tropical forest soils collected from the Short Cloud Forest site in the El Yunque National Forest in Puerto Rico, USA, part of the Luquillo Long-Term Ecological Research Station. At this site, the soils experience strong fluctuations in redox potential and are net methane producers. Because of its ability to grow on lignin anaerobically, we sequenced the genome. The genome of "E. lignolyticus" SCF1 is 4.81 Mbp with no detected plasmids, and includes a relatively small arsenal of lignocellulolytic carbohydrate active enzymes. Lignin degradation was observed in culture, and the genome revealed two putative laccases, a putative peroxidase, and a complete 4-hydroxyphenylacetate degradation pathway encoded in a single gene cluster.},
	issn = {1944-3277},
	doi = {10.4056/sigs.2104875},
	author = {Deangelis, Kristen M and D{\textquoteright}haeseleer, Patrik and Chivian, Dylan and Fortney, Julian L and Khudyakov, Jane and Simmons, Blake and Woo, Hannah and Arkin, Adam P and Davenport, Karen Walston and Goodwin, Lynne and Chen, Amy and Ivanova, Natalia and Kyrpides, Nikos C and Mavromatis, Konstantinos and Woyke, Tanja and Hazen, Terry C}
}
